Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05820 ATGAAGATGAAGATGAAGTTGAATCTGTTTTCGTTTCTTTTTACATTTACCATTCTATCCTCCCATGTCCTCTCCATTTCCGATCTCATCCTCACCAAGGTTGACCGTCGTATTGATCTGTCAACACAAATTGTCCGCACCACTACTACTCTAAAGGTAGAGAATGCAGGGTCTGATATTGTATCAGAAATCTTGTTGTCCTTTCCCGAAAACCATGCAATTCACTTGGCATACTTGTCGGCAACACTAAATGAAGGAAGGGGAAAGGCGAAACCGTTTTCTGGTGTTGGTTTACCTTATGATGAAGTTGTCAGCCCTAAAGATTTTCCCAATTCCTTGAAAGTTTACTCCGTAACTTTACCTAAAGGTCTTGGAAAGGGAGATAGTCTGACGTTGGATGTCTTGGCTGTTTTCACCCACATATTGCAACCATTTCCAGAGAAAATTAGTCAAGCTGACATCCAGCTTCTGCTTTTTCAAGAGACGGCACACTATCTTACTCCTTATCCTGTAAAGGTTCAATCACTCACTGTTAAATTACCTGATGCAAGAATAGAGTCCTACTCAAAACTGGAAAAGACAAAACTTCAGGGATCTGAATTGAAATATGGTCCATATGAGAATCTTCCTCCATTTGCATACTTGCCAATGGTTGTCCACTTTGAGAATAATCAGCCTTTTGCCGTTGCTAAAGAGTTGGTGCGGGAGATTGAGATATCCCATTGGGGCAATGTGCAGATCACAGAGCATTATAACCTTGTTCATGGCGGTGCTCAGAGCAAAGGAGAATTTTCTAGGCTTGACTATCAGGCCAGGCCGTATGTAAGAGGTGCATCAGCCTTTAGGCGTCTTGTTGCCAAGCTGCCACCAAGAGCTCATTCAGTGTACTACAGGGATGAAATTGGCAACATTTCCACTTCTAATTTGTGGGGTGACTCAAAAAAGACTGAACTGGAGATCGAACCTAGGTTCCCAATTTTTGGGGGTTGGAAAACTGCCTTTACCATTGGGTACGGGTTGCCACTTCAGGACTTTTTATTTGGAATTGATGGAAAGCGCTTCCTTAATATCTCTTTTGGTTCCCCCATTAATGAGTTGGTGGTTGACACTCTTATTGTGAAGGTTGTTTTGCCCGAGGGTTCAAAAGATATTTCACCAGCTGTTCCATTTCCTGTGAAACAAAGACATGAGACAAAATTTTCTCACTTGGATATTGCTGGTAGACCTGTTGTTGTGCTAGAGAAGAACAATGCTGTACCTGAGCACAATGAGCATTTTCAGGTCTATTATAAGTTCAACCGTCTTTCTATGCTCAGGGAGCCATTGATGTTGATTTCTGGGTTTTTCTTTCTATTTGTTGCCTCCATTGTCTACATGCATGCAGACTTGTCAATCTCCAAGACTTCTGCATCTTATTTGGCAAAGATCCAATGGGAAGAGGTTCAAGCAACTATTCATCAGGTGCATACTATCATTAGCCGTTGCTTAACAACACATGACAAGCTAGAAGCATCATTGCGTGATCTTTCTAGGACAGGAGATATTCAAGCATGTAAAGCAACCCGAAAATCAGTTGATAGCTCACTGAAAGAGCTCACAAAAGAGTTGAAATTGCCAGTGGCATTCTTGCAGTCTTCACCACAAGCTGCACAAATATTACCCAAGGTGGAGGAAGTTATTGCGAAGGAGAGAGATTTACAGGAGAGACTTATGGCAAAACACTCTACTGTTGTTGACTGTTATGAGAAGAAGTTAGGAGGAAGGGAAATTGAGAATCGAGTTGCTTCACATCAGCTGAAAATTACAGCTCTGAGACAAGAGATTGACGATCTTATGGACTTGATCGATGAGATATGA 1857 0.4173 MKMKMKLNLFSFLFTFTILSSHVLSISDLILTKVDRRIDLSTQIVRTTTTLKVENAGSDIVSEILLSFPENHAIHLAYLSATLNEGRGKAKPFSGVGLPYDEVVSPKDFPNSLKVYSVTLPKGLGKGDSLTLDVLAVFTHILQPFPEKISQADIQLLLFQETAHYLTPYPVKVQSLTVKLPDARIESYSKLEKTKLQGSELKYGPYENLPPFAYLPMVVHFENNQPFAVAKELVREIEISHWGNVQITEHYNLVHGGAQSKGEFSRLDYQARPYVRGASAFRRLVAKLPPRAHSVYYRDEIGNISTSNLWGDSKKTELEIEPRFPIFGGWKTAFTIGYGLPLQDFLFGIDGKRFLNISFGSPINELVVDTLIVKVVLPEGSKDISPAVPFPVKQRHETKFSHLDIAGRPVVVLEKNNAVPEHNEHFQVYYKFNRLSMLREPLMLISGFFFLFVASIVYMHADLSISKTSASYLAKIQWEEVQATIHQVHTIISRCLTTHDKLEASLRDLSRTGDIQACKATRKSVDSSLKELTKELKLPVAFLQSSPQAAQILPKVEEVIAKERDLQERLMAKHSTVVDCYEKKLGGREIENRVASHQLKITALRQEIDDLMDLIDEI 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05820 618 PANTHER RIBOPHORIN I 10 474 IPR007676 GO:0006486|GO:0016020
Trre5g05820 618 Coils Coil 594 618 - -
Trre5g05820 618 Pfam Ribophorin I 31 458 IPR007676 GO:0006486|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05820 Trre-Chr5 57921158 57925204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05820 25 556 Miscellaneous Gene Families AT1G76400 67.293 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05820 K12666 - gmx:100817203 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05820 5 57921158 57925204 Trre5g05820 5 57921158 57925204 ECH