Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05812 ATGGCCACTCATGCAGCTTTAGCATCTACAAGAATCCCTACAAACACAAAGTTTCCATCTAAGGCCTCTTACTCTTTCCCAACTCAATGTGCCTCAAAGAGACTTGGGGTGGCTGAATTCTCAGGACTAAAATCAACTTCATGTGTTACCTATGCCATTAATGCTAGAGACTCTTCTTTTTTTGATGTTGTAGCTGCTCAACTCACTCCCAAGGTCAGTGGATCAACTCCTGTGAGAGGAGAGACTGTGGCTAAGTTGAAGGTAGCAATCAATGGTTTCGGACGCATTGGTAGAAATTTCCTCAGATGCTGGCACGGTCGAAAGGACTCACCCCTTGAAGTAATTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACTTGTTGAAATATGATTCTATGCTTGGAACTTTTAAAGCCGATGTGAAAATACTAAATAATGAGACCATTACAGTTGATGGTAAACCCATCAAGGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCTTGGGCTGAACTTGGAATTGACATTGTTATTGAGGGAACAGGAGTGTTTGTGGATGGACCTGGAGCTGGCAAACACATCCAAGCAGGTGCCAAGAAAGTTATCATCACTGCTCCTGCAAAGGGTGCTGATATTCCAACTTATGTTGTTGGAGTAAATGAACAAGACTATGGCCATGAAGTAGCCGACATCATAAGCAATGCTTCTTGCACCACAAACTGTCTTGCTCCCTTTGTGAAGATCCTAGATGAAGAGTTTGGAATTGTGAAGGGAACCATGACAACCACACATTCCTACACAGGAGATCAGAGGCTTTTGGATGCTTCACACAGGGACTTGAGAAGAGCCAGGGCTGCAGCACTGAACATTGTCCCCACCAGCACCGGAGCAGCCAAGGCCGTGTCTCTAGTGCTACCACAGCTCAAGGGAAAGCTCAACGGAATCGCCCTTCGTGTGCCTACACCCAATGTTTCAGTTGTTGACCTTGTGGTAAATGTTGCGAAGAAGGGTATTTCAGCTGAAGATGTCAATGCAGCATTCAGAAAGGCAGCTGAAGGGCCACTTAAAGGTATATTGGATGTCTGTGATGAACCACTTGTGTCTGTTGACTTCCGCTGCTCCGACGTTTCTTCTACCATTGACTCTTCCCTGACTATGGTCATGGGAGACGATATGGTTAAGGTGGTTGCTTGGTATGACAATGAATGGGGTTACAGCCAAAGAGTGGTGGATTTGGCACATCTAGTAGCAAACAAATGGCCAGGAACCCCTAAAGTAGGGAGTGGAGATCCATTGGAGGACTTCTGCGAGACAAATCCATCCGATGAGGAATGCAAAGTTTACGAATAG 1356 0.4558 MATHAALASTRIPTNTKFPSKASYSFPTQCASKRLGVAEFSGLKSTSCVTYAINARDSSFFDVVAAQLTPKVSGSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKADVKILNNETITVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEQDYGHEVADIISNASCTTNCLAPFVKILDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKWPGTPKVGSGDPLEDFCETNPSDEECKVYE 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05812 451 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 260 276 IPR020831 GO:0016620
Trre5g05812 451 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 195 208 IPR020831 GO:0016620
Trre5g05812 451 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 357 372 IPR020831 GO:0016620
Trre5g05812 451 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 316 333 IPR020831 GO:0016620
Trre5g05812 451 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 233 251 IPR020831 GO:0016620
Trre5g05812 451 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 84 422 IPR020831 GO:0016620
Trre5g05812 451 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 87 188 IPR020828 GO:0051287
Trre5g05812 451 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 237 244 IPR020830 GO:0016620
Trre5g05812 451 Gene3D - 87 415 - -
Trre5g05812 451 FunFam Glyceraldehyde-3-phosphate dehydrogenase 86 246 - -
Trre5g05812 451 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 244 401 IPR020829 GO:0016620
Trre5g05812 451 FunFam Glyceraldehyde-3-phosphate dehydrogenase 238 403 - -
Trre5g05812 451 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 239 402 - -
Trre5g05812 451 SMART gp_dh_n_7 86 239 IPR020828 GO:0051287
Trre5g05812 451 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 87 413 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Trre5g05812 451 Gene3D Dihydrodipicolinate Reductase; domain 2 238 403 - -
Trre5g05812 451 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 85 255 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05812 Trre-Chr5 57888439 57891402 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05812 K05298 - gmx:732571 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05812 5 57888439 57891402 Trre5g05812 5 57888439 57891402 ECH