Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05725 ATGGATACCCTTTCTCTCTTTTGCACCGGAGCTCTTCTCGCCGGCGGCCTTTACTGGTTCGTCTGCGTCCTCGGTCCCGCCGAACGAAAAGGCAAACGCGCCACCGATCTATCCGGTGGTTCAATTTCCTCAGAAAAAGTCCAAGACAGTTACCAACAATACTGGTCTTTCTTCCGCCGCCCAAAAGAGATCGAAACCGCCGAGAAAGTCCCAGATTTCGTCGACACCTTTTACAATTTAGTTACCGATATTTACGAATGGGGATGGGGTCAATCCTTCCATTTTTCACCCTCCATTCCCGGTAAATCTCACCGTGACGCCACGCGCCTCCACGAAGAAATGGCTGTCGATCTAATCGAGGTTAAATCTGGCGACAAAATTCTCGATGTTGGATGCGGTGTTGGTGGACCTATGAGAGCCATCGCAGCTCACTCACGCGCTAACGTTGTTGGAATCACAATCAACGAATATCAAGTGAATCGTGCAAAACTTCATAACAAAAAAGCTGGTCTCGATTCTCTATGTGATGTTGTTTGTGGTAATTTTCTTGAGATGCCTTTTCCAGATAACACCTTCGACGGCGCGTATTCAATTGAAGCAACATGTCACGCGCCTAAGTTAGAAGAAGTTTACGCCGAAGTTTTTAGGGTTTTGAAACCAGGTGCACTTTATGTTTCATATGAATGGGTTACTACTGAGAAATTCAAATCTGAAAATCCAGAACATGTTGAGATTATTCAAGGGATTGAAAGAGGTGATGCTTTACCTGGTTTAAGAAGCTATGCTGATATACCTGAAATGGCTAAGAAAGTTGGTTTTGAGGTTGTTAAGGAACGAGATCTGGCTTTACCACCGGCTGAGCCATGGTGGAGCAGATTGAAAATGGGTAGGCTTGCTTATTGGCGTAACCATGTTGTTGTAACGGTTCTTTCTGCTTTGGGAATAGCGCCTAAAGGAACAGTTGATGTTCATGAGATGCTTTTCAAGACTGCTGACTATTTGACCAGAGGTGGTGATGCTGGAATTTTCTCACCTATGCATATGATTCTGCTCAGAAAACCAAAACAACATGAAAATTGA 1080 0.4454 MDTLSLFCTGALLAGGLYWFVCVLGPAERKGKRATDLSGGSISSEKVQDSYQQYWSFFRRPKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIEVKSGDKILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAKLHNKKAGLDSLCDVVCGNFLEMPFPDNTFDGAYSIEATCHAPKLEEVYAEVFRVLKPGALYVSYEWVTTEKFKSENPEHVEIIQGIERGDALPGLRSYADIPEMAKKVGFEVVKERDLALPPAEPWWSRLKMGRLAYWRNHVVVTVLSALGIAPKGTVDVHEMLFKTADYLTRGGDAGIFSPMHMILLRKPKQHEN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05725 359 PANTHER - 1 357 - -
Trre5g05725 359 ProSiteProfiles SAM-dependent methyltransferase Erg6/SMT-type domain profile. 77 354 IPR030384 GO:0008168
Trre5g05725 359 Pfam Methyltransferase domain 128 224 IPR013216 GO:0008168
Trre5g05725 359 Gene3D Vaccinia Virus protein VP39 44 309 IPR029063 -
Trre5g05725 359 Pfam Sterol methyltransferase C-terminal 291 354 IPR013705 GO:0006694|GO:0008168
Trre5g05725 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 77 354 IPR029063 -
Trre5g05725 359 CDD AdoMet_MTases 126 230 - -
Trre5g05725 359 FunFam Methyltransferase 44 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05725 Trre-Chr5 57212904 57213983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05725 116 280 Acyl Lipid Metabolism Gene Families AT1G73600 29.091 2.19e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05725 K08242 - gmx:100804517 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05725 5 57212904 57213983 Trre5g05725 5 57212904 57213983 ECH