Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05723 ATGGCATTCATCAAATCAAAGGTACAAATTCACTTGCAAAAATCTCTTTTCCCTCTCTTACCAAACACTTTCAGACTATGTTCTTCTTCACCTCTTCTTTCACAACACGACACCGACAACAACACTCCTCGAAACACAAATCTCTCCTCTGAAGACACTCAAATAGTCGACAAATTTCACACCGTAATCAAAGACCACTACCACAAAAACCCTAACCCTAATCCTCTTTCACCCTCGCACAATTTCTGCATACCCGATCTTTCCATCGATTTTTCCAAAATCTCTACCGTTCATTCAATTTCACCATCAATCACACGCCGTGTGATTGAGAAATGCGGTGGTGTCCGCCAGGGTATTCCATTTCTCCAATCCCTAGCTTTTTTCAATTGGGCTACCACGCTCGAAGGTTTTCCCTCATCCCCGGAGCCCTACAATGAAATGATTGATCTTGCTGGAAAGCTCAGACATTTCGATTTAGCGTGGAATTTGATTGATTTGATGAAATCACGCGGAGTTGAAATAACAGTTAGTACATTCTCTGTTCTCGTTCGGCGTTACATTAGGGCTGGATTGGCTGCGGAGGCGGTGCATGCTTTTAACCGAATGGAGGACTATGGTTGTAAACCGGATAAGGTTTCATTTTCGATTGTTATTAGTAGTTTATGTAAGAAGAGAAGAGCGAGTGAAGCACAATCGTTTTTCGATAGTCTTAAGCATAAGTTTGAACCTGATGTTATAGTTTATACTAGTTTAGTTCATGGTTGGTGTCGTGCTGGTGACATATCGAAAGCTGAGGAGGTTTTCAGTGATATGAAGGTGGCTGGTGTTAAGCCTAATGTTTATACTTATAGCATTGTGATTGATTCGTTGTGTCGGTGTGGACAAATCACTCGTGCTCATGATGTTTTCTCTGAGATGATTGATGCGGGATGTGATCCTAATGCTGTAACTTTTAATAGTCTTATGAGGGTTCATGTGAAAGCTGGTAGAACTGAAAAGGTTTTGCAGGTTTATAATCAAATGAAGAGACTTGGTTGTGTTGCTGATACGATTAGTTATAATTTCTTAATTGAGAGTCATTGTAAGGATGAGAATCTCAATGAAGCTGTGAAGGTTCTTGATACAATGGTTAAGAAAGGGGTTGCTCCTAATGCATCTTCTTTCAATTCGATTTTCGGATGCATAGCTGAATTGCATGATGTGAATGGTGCGCATCGGATGTATGCTAAAATGAAAGAACTGAAGTGCAAGCCTAATACATTGACTTTTAATATACTGATGAGAATGTTTGCTGACTCGAAATCTATTGATATGGTTCTGAAGTTAAAAAAGGAAATGGACGAGAGTGAAGTTGAACCTAATGTGAATACTTACCGAATTTTGATTTTGATGTTTTGTGAAAAGGGGCACTGGAATAATGCGTACAAGTTAATGAAGGAGATGGTTGAAGAAAAAAGCCTAAAGCCAAATCTGTCGATTTATGAAACGGTTTTGGAGCTGCTGAGGAAGGCTGGACAGCTTAAAATGCATGAAGAACTGGTCGATAAGATGGTTGCCAGAGGATTTGTCTCTCCCCGTCCTTTGTAG 1587 0.4001 MAFIKSKVQIHLQKSLFPLLPNTFRLCSSSPLLSQHDTDNNTPRNTNLSSEDTQIVDKFHTVIKDHYHKNPNPNPLSPSHNFCIPDLSIDFSKISTVHSISPSITRRVIEKCGGVRQGIPFLQSLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWNLIDLMKSRGVEITVSTFSVLVRRYIRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAQSFFDSLKHKFEPDVIVYTSLVHGWCRAGDISKAEEVFSDMKVAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCVADTISYNFLIESHCKDENLNEAVKVLDTMVKKGVAPNASSFNSIFGCIAELHDVNGAHRMYAKMKELKCKPNTLTFNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWNNAYKLMKEMVEEKSLKPNLSIYETVLELLRKAGQLKMHEELVDKMVARGFVSPRPL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05723 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Trre5g05723 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Trre5g05723 528 Pfam PPR repeat 144 172 IPR002885 -
Trre5g05723 528 NCBIfam pentatricopeptide repeat 457 490 IPR002885 -
Trre5g05723 528 NCBIfam pentatricopeptide repeat 422 455 IPR002885 -
Trre5g05723 528 NCBIfam pentatricopeptide repeat 351 385 IPR002885 -
Trre5g05723 528 NCBIfam pentatricopeptide repeat 316 350 IPR002885 -
Trre5g05723 528 NCBIfam pentatricopeptide repeat 144 175 IPR002885 -
Trre5g05723 528 NCBIfam pentatricopeptide repeat 281 315 IPR002885 -
Trre5g05723 528 NCBIfam pentatricopeptide repeat 387 420 IPR002885 -
Trre5g05723 528 NCBIfam pentatricopeptide repeat 246 280 IPR002885 -
Trre5g05723 528 NCBIfam pentatricopeptide repeat 178 210 IPR002885 -
Trre5g05723 528 SUPERFAMILY TPR-like 184 423 IPR011990 GO:0005515
Trre5g05723 528 Pfam PPR repeat family 184 223 IPR002885 -
Trre5g05723 528 Pfam PPR repeat family 243 292 IPR002885 -
Trre5g05723 528 Pfam PPR repeat family 313 349 IPR002885 -
Trre5g05723 528 Gene3D Tetratricopeptide repeat domain 448 520 IPR011990 GO:0005515
Trre5g05723 528 Gene3D Tetratricopeptide repeat domain 378 447 IPR011990 GO:0005515
Trre5g05723 528 Gene3D Tetratricopeptide repeat domain 236 307 IPR011990 GO:0005515
Trre5g05723 528 Gene3D Tetratricopeptide repeat domain 308 377 IPR011990 GO:0005515
Trre5g05723 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Trre5g05723 528 Pfam Pentacotripeptide-repeat region of PRORP 352 516 IPR033443 -
Trre5g05723 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Trre5g05723 528 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 131 390 - -
Trre5g05723 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 240 IPR002885 -
Trre5g05723 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Trre5g05723 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
Trre5g05723 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Trre5g05723 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Trre5g05723 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 489 IPR002885 -
Trre5g05723 528 Gene3D Tetratricopeptide repeat domain 107 228 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05723 Trre-Chr5 57200394 57201980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05723 131 525 Glycosyltransferase AT1G05670 28.218 1.07e-53 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05723 - - gmx:100800850 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05723 5 57200394 57201980 Trre5g05723 5 57200394 57201980 ECH