Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05719 ATGTTATCTCTCAATACCTCATGTGGATGTTGCGGTATTTCCACAGCAACAAGAGCATTCCAATTTCACTTCCGAACTTCACCATCACAATTTTTCTCCTCTCCCACTACTAACAACTATAAATTTCGTTATAGCATTACGAGAGCCACTTCTACTTTTTCCGATAAATCCAATTCCAACGGAGAACCAAAATCAAATTACTCCGGCGTCCAGTTAGAAGAGATAGTCGACGGTGGAACCAAATCTGGAAAACTGAGACTCGACAGTTGGATCTCTTCTCGCATCAATGGCATCAGTAGAGCTCGTGTTCAATCAAGTATTAAAGCTGGACTCGTTCATGTCAATGGTCGTGTTGTTGATAAGGTTTCTTTCAATGTCAGAGCTGGGGATGAGATCAAGTGCACAATTGCAGAGTTGCAGCAGTTGAGAGCTGTGCCAGAAAACATACCTTTGGATATAGTTTATGAAGATGACCACTTGCTAGTCATAAATAAACCTGCACACATGGTTGTGCATCCAGCACCTGGAAATACGTCTGGGACACTTGTAAATGGAATTCTTCACCATTGCAACCTGCCAAATGTTGAATTTTCTAAAGAGGGAGCTCTTTCAGATACAGAAGATTCTGATGATGAACTTAATGGCTTCTCATCCCAGGAAAGTTCTTGTGATGGTTTAGATTCTAAATTTTCTATGGCATCAATTCGACCAGGGATTGTACACAGATTAGACAAAGGCACGAGTGGGTTACTAGTTGTTGCTAAGGATGAACATTCTCATATGAAATTGTCTGAACAATTCAAGCTACGCACTATCAACAGGGTCTATGTTAGTCTCACTGCTGGGTTACCTACTCCTGTTGCTGGGCGTGTTGAGGTTCCAGTTGGTCGTGATCCTAATAATCGGCTTCGTATGACCGCTGTAGTTGGACCAGTTAATTCTGTGAAAGCCCGTCATGCTGCTAGTAGGTACAAAGTAATTGAGATACTGGCTGGGGGTAGCTGTGCATTGGTTGAGTGGAAGTTGGAAACTGGACGCACTCATCAGATCCGTGCACATGCCAAGTATTTGGGTGTACCTTTGCTTGGTGACGAGGTATATGGAGGGACGAAAAGCATGGTCTTGTCACTGCTACGGCCACGAACAACTGCGAGTTTGCATAGCGAAATGTTTAAAGTAGTTTCTGAGCTAGATAGGCCTTGCCTTCATGCTTTGACTCTGGGGTTTCAGCATCCTCATACAGGGGAGCAGGTGCACTTTTCATGCGAACCCCCTGTAGATTTTAATGAGATTTTGAGCCAGCTTCGTAGAATTGGTAGTGAGAAAATTTCTCACTCAAAACAAAAGTCAAATTATTAA 1359 0.429 MLSLNTSCGCCGISTATRAFQFHFRTSPSQFFSSPTTNNYKFRYSITRATSTFSDKSNSNGEPKSNYSGVQLEEIVDGGTKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDKVSFNVRAGDEIKCTIAELQQLRAVPENIPLDIVYEDDHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEGALSDTEDSDDELNGFSSQESSCDGLDSKFSMASIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKLRTINRVYVSLTAGLPTPVAGRVEVPVGRDPNNRLRMTAVVGPVNSVKARHAASRYKVIEILAGGSCALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTTASLHSEMFKVVSELDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFNEILSQLRRIGSEKISHSKQKSNY 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05719 452 SMART s4_6 85 150 IPR002942 GO:0003723
Trre5g05719 452 CDD S4 86 164 - -
Trre5g05719 452 Pfam RNA pseudouridylate synthase 159 354 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre5g05719 452 SUPERFAMILY Alpha-L RNA-binding motif 84 172 - -
Trre5g05719 452 Pfam S4 domain 86 132 IPR002942 GO:0003723
Trre5g05719 452 ProSitePatterns Rlu family of pseudouridine synthase signature. 240 254 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre5g05719 452 ProSiteProfiles S4 RNA-binding domain profile. 85 158 - -
Trre5g05719 452 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 89 433 - -
Trre5g05719 452 CDD PseudoU_synth_RluA_like 160 409 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre5g05719 452 SUPERFAMILY Pseudouridine synthase 145 436 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Trre5g05719 452 Gene3D - 70 141 IPR036986 GO:0003723
Trre5g05719 452 Gene3D Pseudouridine synthase 209 439 - -
Trre5g05719 452 Gene3D Pseudouridine synthase 152 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05719 Trre-Chr5 57179766 57185675 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05719 K06180 - gmx:100810383 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05719 5 57179766 57185675 Trre5g05719 5 57179766 57185675 ECH