Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05699 ATGCATCAAGGAGATTATACCTCCGCTCCATACTACCAATTCCCTCATATGCAGCAAAACCCCAACCCAATCCCCAACCCTACACCACCTCCTCAATCCGATCCAATTCCGAACCACTACGCTTCCGCACCTCCTTTCACTCCCAATTACGATTATTCCAATTATTCTCCTTATCCTCCTCATAATCCCGAACCTGTTCTTTCTTCCAACCCTAATTTCAATCCTAGCTTCGAATCCAATCCTCCTTATCAACAACCACCGTCACAGCCATATTATCCACCCTACGATCAACCTCATACCGCTCCAAATTATGCACCTCCTAACCCTAACCCTAATCCCATTCCCAATTCATCGTTGTATAATTCGGCACCGTATCCCCACACCGCATCTTCGGTTCCTCCGATTCCATCATACGAAAGCCAATACGAGAATCCGGTGAAATCCGATTACGGTGCCGGTGCTGGCGGCGGTGCTTATTTCGATGACAGGTACGGAAGTAGTTTTATTCGGAGAAGTTCTGATTTGGGATCGGAATTGTATGGTACGCGTCATGACGGTGCTTTGTCTAGGTATGAATCCGGTGGTGGTGGTGGTAGCGGTGGTGGTGATGAGGGTTATGGAGATGGAGTGTATGCTTATCAAGGGGGGAAAGTTGAACCGTATGGTGCACGTGGTACTGCTCCTAAATCTTCGACTTGGAATTCAAATTCGTCGAATTCAACACCTTCGTTTGATGATTTTGGGAGGCCGATTAGTTTTCCGAAAGAATCTTCAGTGGCAAGTAAGATTGTGAAAGCTGTGCCGAAGGTTGATACACAAGAAGATGCGAAAAGTGGGGTGCAAAAGTTTCGTGTCAAGCTGTTGGCAGAGAGTGGTGGTCAGAGTACAATGGATGTTCTCTGCCAGGTTGGTTTGGATGGACTTCGCATGCTAGATCCAAATACCAATCGGACACTGAGAATATATCCTCTTGAGAACATAACAAGATGTGATAGATTCGATTCATCTACTTTTGCATTTTGGTCGAAGAGCCCTGTAGACATTGAGCCAAGACGAATTAGATTGCAATCTAATAGTTACACCACCAATACACTTTTGGATACAGTGACTGCTGCGACCATACAGTTCAAGGAAATGGGTGGAAGTAGGAGGCCTGCTGAATCATTGAAAATAAATGAACAGACTGCCGAAAGAAAGAAAGGCCTCGGTGATTGGATGAATATCATCAAACCTGCCAACGAAGAGAAAGATCATTGGGTCCCAGACGAAGCAGTCTCAAAATGCACTGCATGCGGCACTGATTTTGGGGCTTTTATACGCAAGCATCACTGTAGGAATTGTGGTGATATTTTCTGTGACAAATGTACACATGGTAGAATTGCTCTAACTGCTGAAGAGAATGCTCAGCCAGTACGAGTTTGCGACCGATGCATGGCAGAAGTGACTCAGAGGCTGACTAGTGCTAAAGAGTCATCAAGTAAACCTCTTCTGCAGAGTCACGAGGATCTTGCTCGGAAACTTCAGGAGGAGCTGGAGAGAAATCGGAAGTCATCAGGTTCCAAGTCTGATGGTTCTGGAAGACGGATGAAGGAGGTTGCATGTCCTATATGCACTGTCCATCTGCAGGTTCAGGTACCTAGCTCAGGTTCCGAGACCATTGAGTGTGGAGTTTGCCAGCATCCATTTCTTGTGAGTTCTTATTGA 1704 0.4595 MHQGDYTSAPYYQFPHMQQNPNPIPNPTPPPQSDPIPNHYASAPPFTPNYDYSNYSPYPPHNPEPVLSSNPNFNPSFESNPPYQQPPSQPYYPPYDQPHTAPNYAPPNPNPNPIPNSSLYNSAPYPHTASSVPPIPSYESQYENPVKSDYGAGAGGGAYFDDRYGSSFIRRSSDLGSELYGTRHDGALSRYESGGGGGSGGGDEGYGDGVYAYQGGKVEPYGARGTAPKSSTWNSNSSNSTPSFDDFGRPISFPKESSVASKIVKAVPKVDTQEDAKSGVQKFRVKLLAESGGQSTMDVLCQVGLDGLRMLDPNTNRTLRIYPLENITRCDRFDSSTFAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTVTAATIQFKEMGGSRRPAESLKINEQTAERKKGLGDWMNIIKPANEEKDHWVPDEAVSKCTACGTDFGAFIRKHHCRNCGDIFCDKCTHGRIALTAEENAQPVRVCDRCMAEVTQRLTSAKESSSKPLLQSHEDLARKLQEELERNRKSSGSKSDGSGRRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSSY 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05699 567 MobiDBLite consensus disorder prediction 222 248 - -
Trre5g05699 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 487 IPR013083 -
Trre5g05699 567 MobiDBLite consensus disorder prediction 1 143 - -
Trre5g05699 567 SMART fyve_4 414 483 IPR000306 GO:0046872
Trre5g05699 567 SUPERFAMILY FYVE/PHD zinc finger 417 489 IPR011011 -
Trre5g05699 567 CDD PTB 264 340 - -
Trre5g05699 567 FunFam Zinc finger, FYVE-type, endofin 409 487 - -
Trre5g05699 567 Coils Coil 497 517 - -
Trre5g05699 567 MobiDBLite consensus disorder prediction 20 42 - -
Trre5g05699 567 MobiDBLite consensus disorder prediction 80 114 - -
Trre5g05699 567 MobiDBLite consensus disorder prediction 115 143 - -
Trre5g05699 567 PANTHER PROTEIN FREE1 1 566 IPR045893 GO:0036258|GO:0043130
Trre5g05699 567 SUPERFAMILY PH domain-like 281 345 - -
Trre5g05699 567 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 422 482 IPR017455 -
Trre5g05699 567 Pfam FYVE zinc finger 418 482 IPR000306 GO:0046872
Trre5g05699 567 MobiDBLite consensus disorder prediction 227 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05699 Trre-Chr5 57055099 57060627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05699 410 483 EF-hand Containing Proteins AT3G14270 36.250 9.90e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05699 - - gmx:100794840 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05699 5 57055099 57060627 Trre5g05699 5 57055099 57060627 ECH