Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre5g05657 | ATGTCTGCATCCGAAGCTGAGAAGAAGGTCGAGCAAGAAAACGAAGTTGTTCCTAAAGGGGGCGAACTCTTGTTCTGTGGTGCCACGTGTTGGGATATCGTTGGTCGTCGCAAAGGTCCTGCTGAGGGTAACTTGGTCTCTCCTTCTCGCCTTCGTCCTCTCGTCGGCATTGATATTCGTTACGTTGCCTCTGGTTGCGCATCTTGTCATTGCGTGGCATTGGATGTAGAAGGGCGTTGCTATACATGGGGACGTAATGAGAAAGGGCAACTGGGTCATGGTGATACCATTCAGCGTGATAGGCCGACTGTGGTGTCTGAACTATCTAAATACAAAATTGTTCAAGCTGGAGCTGGGAGGAGCCATACGGTAGTTGTTACAGATGATGGAAATTCGCTAGCATTTGGTTGGAACAAACATGGACAGCTAGGTTCGGGTTCTGCAAAAACTGAAATTGAACCATCTCCTATTCGCTGTCTCGTGTCTGAAGTCAAATATGCTACATGTGGTGGTGACTTTACTGTGTGGTTATCTTCAGTCGACGGATCTTCTATACAGACTGCTGGTCTTCCACAGTATGGGCAACTCGGGCATGGAACAGATAACGAGTATAATTCCAAAGACAGTTCTGTGAAATTAGTTTATGAAGCACAGCCACGTCCTCGAGCAATAGCTTCCCTTGCTGGTGAAACCATTGTCAAGGTGGCATGTGGGACAAATCACACAGTGGCGGTGGATAAGAATGGCTTTGTCTACACGTGGGGTTATGGTGGTTATGGAAGGCTAGGACATAGGGAGCAGAAGGATGAATTTTCTCCACGCCGTGTTGACATTTTTACGAATAGAAATGTTTTGCCTCCTGATGCAATTATCTCAGCTGGTTCTGTGAATTCTGCATGTACTGCAGCTGGAGGGCAATTGTACATGTGGGGCAAAATAAAAAACACTGGTGATGACTGGATGTACCCTAAGCCTCTAATGGATTTAAGCGGTTGGAATATACGATGCATGGATTCAGGGGGCATGCACCATTTTGTTGGGGCTGATTCCTCGTGCATAAGTTGGGGTCATGCTCAGAATGGAGAGCTGGGATATGGACCTACTGGACAGAAGTCTTCAGCTGTACCAAAAAAGGTGGATATACTTGAGGGTATGCATGTATTGAGCGTTGCTTGTGGTCTGGGTCATTCTATGGTTGTCGTTGACAGAGCAAACATTGCTGATAGACTTGAGCAGCTTGATACACATGATGGCAAAGCTGCTGGTGAAGGTAATGAGGCCGTGAACAAAACTTCAGCGCCTAAGAAGGCTGCTGCAAAAAAGGGTGCAAAGAAAGCTGACAGCTCAAAGAAGAGGAAAAAAGCAAAAGATTCATCCGACTCTGAAGAAGACCAAGAAGAGGCTGAAGAAAGTGATAACAGTGATGATGAAGTTAACGGTGAGGCTGATGTTAAACCATCACGCGGTGGAAAAAATTCTGGCCGAGGGCGTGGTCGCGGTCGCGCTCCTGCAAATAAAAGCAGTTCTAAATCCTCTCCAGTGAAGTCATCCGGTAAGAGAGGAAGACCCAGAAAGTCATGA | 1581 | 0.4674 | MSASEAEKKVEQENEVVPKGGELLFCGATCWDIVGRRKGPAEGNLVSPSRLRPLVGIDIRYVASGCASCHCVALDVEGRCYTWGRNEKGQLGHGDTIQRDRPTVVSELSKYKIVQAGAGRSHTVVVTDDGNSLAFGWNKHGQLGSGSAKTEIEPSPIRCLVSEVKYATCGGDFTVWLSSVDGSSIQTAGLPQYGQLGHGTDNEYNSKDSSVKLVYEAQPRPRAIASLAGETIVKVACGTNHTVAVDKNGFVYTWGYGGYGRLGHREQKDEFSPRRVDIFTNRNVLPPDAIISAGSVNSACTAAGGQLYMWGKIKNTGDDWMYPKPLMDLSGWNIRCMDSGGMHHFVGADSSCISWGHAQNGELGYGPTGQKSSAVPKKVDILEGMHVLSVACGLGHSMVVVDRANIADRLEQLDTHDGKAAGEGNEAVNKTSAPKKAAAKKGAKKADSSKKRKKAKDSSDSEEDQEEAEESDNSDDEVNGEADVKPSRGGKNSGRGRGRGRAPANKSSSKSSPVKSSGKRGRPRKS | 526 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre5g05657 | 526 | PANTHER | PROTEIN RCC2 | 7 | 507 | IPR028641 | - | |
| Trre5g05657 | 526 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 390 | 400 | IPR000408 | - | |
| Trre5g05657 | 526 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 249 | 304 | IPR000408 | - | |
| Trre5g05657 | 526 | Gene3D | - | 210 | 439 | IPR009091 | - | |
| Trre5g05657 | 526 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 183 | 248 | IPR000408 | - | |
| Trre5g05657 | 526 | MobiDBLite | consensus disorder prediction | 462 | 477 | - | - | |
| Trre5g05657 | 526 | SUPERFAMILY | RCC1/BLIP-II | 16 | 403 | IPR009091 | - | |
| Trre5g05657 | 526 | PRINTS | Chromosome condensation regulator RCC1 signature | 235 | 251 | IPR000408 | - | |
| Trre5g05657 | 526 | PRINTS | Chromosome condensation regulator RCC1 signature | 79 | 95 | IPR000408 | - | |
| Trre5g05657 | 526 | PRINTS | Chromosome condensation regulator RCC1 signature | 113 | 126 | IPR000408 | - | |
| Trre5g05657 | 526 | PRINTS | Chromosome condensation regulator RCC1 signature | 251 | 265 | IPR000408 | - | |
| Trre5g05657 | 526 | PRINTS | Chromosome condensation regulator RCC1 signature | 132 | 148 | IPR000408 | - | |
| Trre5g05657 | 526 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 116 | 126 | IPR000408 | - | |
| Trre5g05657 | 526 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 350 | 403 | IPR000408 | - | |
| Trre5g05657 | 526 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 235 | 245 | IPR000408 | - | |
| Trre5g05657 | 526 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 130 | 180 | IPR000408 | - | |
| Trre5g05657 | 526 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 77 | 126 | IPR000408 | - | |
| Trre5g05657 | 526 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 129 | 175 | IPR000408 | - | |
| Trre5g05657 | 526 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 248 | 286 | IPR000408 | - | |
| Trre5g05657 | 526 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 354 | 400 | IPR000408 | - | |
| Trre5g05657 | 526 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 189 | 245 | IPR000408 | - | |
| Trre5g05657 | 526 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 78 | 129 | IPR000408 | - | |
| Trre5g05657 | 526 | MobiDBLite | consensus disorder prediction | 417 | 526 | - | - | |
| Trre5g05657 | 526 | Gene3D | - | 15 | 209 | IPR009091 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre5g05657 | Trre-Chr5 | 56654466 | 56659911 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre5g05657 | - | - | gmx:100819842 | 830.476 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre5g05657 | 5 | 56654466 | 56659911 | Trre5g05657 | 5 | 56654466 | 56659911 | ECH |