Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05654 ATGAGTAAGAGACCACCACCTGATCCTGTGGCTGTGCTACGAGGTCATCGCGCTTCCGTCACCGATATTTCTTTTCATCCTTTTAAGCCTATATTATTCTCCGGTTCTGCTGATGGTGAACTGCGAATTTGGGATACCTTTCGTCGTCAAACAGTTTCATCAGCATGGTTACATAGTGCTGCACATGGGATTGTTGCTCTTGCCAGTAGTTCTTTGCTTGGGACTAATAAATTTGTCAGCCAGGGTAGGGATGGAACTCTCAAAGTTTGGGATTTTGATGATGCTGGTTTGTCTAGAATTCCATCACTTACAATCAAGACAAACACTTACCACTTTTGTAAGTTTTCCATGGCTAAGAAGAATCAGAGTACTGGGTTAAAAGAAGGGGAACCATCAAAAGATTGCATTGAAACAGAAGAGGCTCATACTAATCAAAGTTGTTCTGAAAGCTCTGAAGGGCTACCGTATGTGGCCTTGTCGGGGGAGAACTCTTCCGAGGTTGAAATTTGGGATCTCAAGTCAGCTGAAAGATTTATACGGCTCCCTTCAAACATTGGTCATAACTCTTCAAGTGTTAGCAGCAAAGGGATGTGCATGGCACTTCAATTGTTTGTACCATCTGAATCACAAGGATTTTTAAATGTCATGGCTGGATATGAAGATGGTTCCATGCTTTGGTGGGATGTACGGAATCCCGGAGCTCCAATAAGTTCTGTGAAATTCCATTCTGAGCCAGTTCTGAGCGTCTGTATTGACGAGTCTTGCAAAGGAGGTGTCTCAGGAGCTGCAGATGAGAGGATTGTGATGTACAGCTTGGATCATTCTTCGGGTACATGTGTGGTCAATAAAGAAATCACATTGGAGCGACCTGGCATCTCAGGCACCTCAATTCGGCCCGATGGCAAAATTGCTGCAACTGCTGGCTGGGACCACAGAGTAAGGATATATAACTACCGCAAAGGAAATGCTTTAGCTGTACTCAAGTATCATCATGCCACGTGCAACACCGTAACTTTTTCGTCTGATTGTAAACTTATGGCTTCTGCATCAGCAGACACAACTGTGGCACTATGGGAATTGTATCCTCCTCGAACATGA 1098 0.4417 MSKRPPPDPVAVLRGHRASVTDISFHPFKPILFSGSADGELRIWDTFRRQTVSSAWLHSAAHGIVALASSSLLGTNKFVSQGRDGTLKVWDFDDAGLSRIPSLTIKTNTYHFCKFSMAKKNQSTGLKEGEPSKDCIETEEAHTNQSCSESSEGLPYVALSGENSSEVEIWDLKSAERFIRLPSNIGHNSSSVSSKGMCMALQLFVPSESQGFLNVMAGYEDGSMLWWDVRNPGAPISSVKFHSEPVLSVCIDESCKGGVSGAADERIVMYSLDHSSGTCVVNKEITLERPGISGTSIRPDGKIAATAGWDHRVRIYNYRKGNALAVLKYHHATCNTVTFSSDCKLMASASADTTVALWELYPPRT 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05654 365 Gene3D - 116 282 IPR015943 GO:0005515
Trre5g05654 365 SMART WD40_4 278 317 IPR001680 GO:0005515
Trre5g05654 365 SMART WD40_4 132 171 IPR001680 GO:0005515
Trre5g05654 365 SMART WD40_4 50 91 IPR001680 GO:0005515
Trre5g05654 365 SMART WD40_4 6 45 IPR001680 GO:0005515
Trre5g05654 365 SMART WD40_4 232 271 IPR001680 GO:0005515
Trre5g05654 365 SMART WD40_4 320 359 IPR001680 GO:0005515
Trre5g05654 365 Pfam WD domain, G-beta repeat 296 317 IPR001680 GO:0005515
Trre5g05654 365 Pfam WD domain, G-beta repeat 324 358 IPR001680 GO:0005515
Trre5g05654 365 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Trre5g05654 365 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Trre5g05654 365 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 327 365 - -
Trre5g05654 365 PANTHER TRANSDUCIN BETA-LIKE 3 4 360 - -
Trre5g05654 365 Gene3D - 283 364 IPR015943 GO:0005515
Trre5g05654 365 SUPERFAMILY WD40 repeat-like 4 359 IPR036322 GO:0005515
Trre5g05654 365 ProSitePatterns Trp-Asp (WD) repeats signature. 346 360 IPR019775 -
Trre5g05654 365 Gene3D - 2 96 IPR015943 GO:0005515
Trre5g05654 365 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Trre5g05654 365 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Trre5g05654 365 PRINTS G protein beta WD-40 repeat signature 346 360 IPR020472 -
Trre5g05654 365 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 365 IPR001680 GO:0005515
Trre5g05654 365 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05654 Trre-Chr5 56622139 56628350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05654 10 92 Miscellaneous Gene Families AT5G08390 31.325 1.08e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05654 K24770 - gmx:100800482 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05654 5 56622139 56628350 Trre5g05654 5 56622139 56628350 ECH