Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05640 ATGGAAGAAGAAAACGGTTACGGTGGAAGTAGCGGTTCTAACTTGGAGACATCAAAAGCAGAGAGATCTGTGTGGCTTATGAAGTGTCCTGTTGCTGTTGCTAAATCATGGCAGAATCATCCTCCTTCTCAACCTCTTTCTAAAGTTGTTTTTTCCATTGATCCTCTTCTTCCTGAAGACGATCCTGCTCATCTCCAGTTTACAATGGAGATGTCTGGCACTGAATCTGTGAATATGCCAAAAACTTATTCTTTGAACATGTTTAAAGACTTCGTTCCTATGTGCATCTTCTCTGAGACTAACGAAGGTGACAAGGTTGCATTGGAGGGGAAAGTAGAGCACAAGTTTGATATGAAGCCACGTCATGAAAACATTGAAGATTATGGAAAATTGTGCCGAGAGAGAACAAAGAAATCTATGATTAAAAATCGACAAGTGCAGGTTATTAGTGATGATACTGGAGCGCACATGAGGCCAATGCCTGGAATGATTGGCTTAGTTTCGTCCAATTTTAAGGATAAGAAGAAGCCACAGCCAGTCAAACAAACTGATACAAAGAGAACTAGAAGAGACCGTGGAGAGCTGGAGGATATAATGTTCAAGCTATTTGAAAAACAGCCTAACTGGGCCTTGAAGCAACTTGTCCAGGAGACTGATCAACCTGCGCAATTCTTGAAAGAGATCCTGAATGAACTGTGTGTATACAATAAAAGAGGTGCTAATCAAGGAACTTACGAGCTGAAGCCAGAATACAAGAAATCTGTTGAAGACACAGGCGCCGAATAA 786 0.4122 MEEENGYGGSSGSNLETSKAERSVWLMKCPVAVAKSWQNHPPSQPLSKVVFSIDPLLPEDDPAHLQFTMEMSGTESVNMPKTYSLNMFKDFVPMCIFSETNEGDKVALEGKVEHKFDMKPRHENIEDYGKLCRERTKKSMIKNRQVQVISDDTGAHMRPMPGMIGLVSSNFKDKKKPQPVKQTDTKRTRRDRGELEDIMFKLFEKQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDTGAE 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05640 261 CDD TFIIF_beta 14 120 - -
Trre5g05640 261 Pfam TFIIF, beta subunit HTH domain 189 252 IPR040450 -
Trre5g05640 261 SUPERFAMILY Rap30/74 interaction domains 13 120 IPR011039 GO:0006367
Trre5g05640 261 PANTHER GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 11 253 IPR003196 GO:0005674|GO:0006366|GO:0006367
Trre5g05640 261 MobiDBLite consensus disorder prediction 169 191 - -
Trre5g05640 261 FunFam General transcription factor IIF subunit 2 187 254 - -
Trre5g05640 261 SUPERFAMILY "Winged helix" DNA-binding domain 187 253 IPR036390 -
Trre5g05640 261 Gene3D - 187 254 IPR036388 -
Trre5g05640 261 MobiDBLite consensus disorder prediction 174 191 - -
Trre5g05640 261 Pfam TFIIF, beta subunit N-terminus 21 139 IPR040504 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05640 Trre-Chr5 56508039 56511749 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05640 K03139 - gmx:100788473 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05640 5 56508039 56511749 Trre5g05640 5 56508039 56511749 ECH