LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g05602	ATGGACTCTGCAATAGCTTCAACTTATGCATCATCTCTCACTACCAAAATTAGCAGTGAAAGATTTACAAGAATCAGAAACACTGTGTTCTTCGGTGAAACTACAAAGGGAACTTTAACCTCTAAATTTCTCACCATTCAATCACCCAAAACTCACTTCAATCTTAGAAAAAATGGAACTTTACATGCTATTCTCACACCTGAGATCAACGATTATGAAAAGTCCACGACTTTTCAAGAGGGACCCTATTTTGAGACTCCCAAAGCTGACCCAAAAAGTGTTGCTTCAATCATTTTGGGTGGTGGTGCTGGAACTCGCCTTTTTCCTCTTACTAGCAAAAGAGCCAAACCTGCGGTTCCAATTGGAGGGTGTTACAGACTCATTGATGTTCCTATGAGTAATTGTATCAACAGTGGTATTAGAAAAATATTCATCTTAACACAGTATAATTCATTCTCTCTTAACCGACACTTGTCTCGCGCCTACAATTTTGGAAATGTCTCCACTTTTGGGGAGGGTTTTGTGGAGGTATTGGCTGCAACTCAAACATCTGGAGAAGCTGGGAAGAAATGGTTCCAAGGGACAGCTGATGCTGTGAGGCAATTTATATGGGTTTTTGAGGATGCTAAGAACAAGAATGTTGAGCATATATTGATACTTTCTGGTGATCATCTTTACCGAATGAACTATATGGATTTTGTACAGAAACATATCGACACAAATGCTGATATCACAGTTTCGTGTCTTCCCATGGACGACAGTCGAGCATCAGATTATGGGTTGATGAAAATTGACGGAACGGGACGGATTATACAGTTTGCGGAAAAGCCCAAGGGATCAGATTTAAAAGCAATGCGAGTTGATACCACGGTTCTTGGGTTATCTCCAGAAGAAGCAAAGGAACATCCTTATATTGCGTCCATGGGTGTCTACGTGTTTAGAACTGAGACCCTATTGGAACTATTAAGATCGAACGGTTCTACATGCAACGACTTTGGATCTGAAATTATCCCATCTGCTGTGAGCGGGCACAATGTCCAGGCATTTTTGTTCAATGACTACTGGGAAGATATTGGAACCATAAAGTCCTTCTTTGATGCAAATTTGGCCCTAACAGAAAATCCTCCAAAATTTCAATTCTATGATCCAAAGACACCTTTCTTCACTTCCCCGAGATTCTTACCACCCACCAAAGTAGAAAAATGCAAGATTGTGGATGCAATTATTTCTCACGGTTGCTTCTTGAGGGAGTGTAGTGTTCAACATTCTATTGTTGGAATACGATCACGTTTAGAGTCTGGTGTGGAGCTTCAGGATACCATGATGATGGGTGCTGATTACTATCAAACTGAGACTGAAATTGCATCTCTGCTGGCAGAAGGAAATGTCCCAGTTGGTGTTGGAGAAAATACCAAAATAAGGAATTGTATAATCGACAAGAATGCAAAAATTGGAAGAAATGTGATCATTACAAATGCTGATGGTGTTGATGAAGCAGACAAAACTAAGGAAGGATTTTACATTAGGTCGGGCATCACTGTTATACTGAAGAATGCAACAATTAAAGATGGAACAATTATATGA	1584	0.399	MDSAIASTYASSLTTKISSERFTRIRNTVFFGETTKGTLTSKFLTIQSPKTHFNLRKNGTLHAILTPEINDYEKSTTFQEGPYFETPKADPKSVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQYNSFSLNRHLSRAYNFGNVSTFGEGFVEVLAATQTSGEAGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMNYMDFVQKHIDTNADITVSCLPMDDSRASDYGLMKIDGTGRIIQFAEKPKGSDLKAMRVDTTVLGLSPEEAKEHPYIASMGVYVFRTETLLELLRSNGSTCNDFGSEIIPSAVSGHNVQAFLFNDYWEDIGTIKSFFDANLALTENPPKFQFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSVQHSIVGIRSRLESGVELQDTMMMGADYYQTETEIASLLAEGNVPVGVGENTKIRNCIIDKNAKIGRNVIITNADGVDEADKTKEGFYIRSGITVILKNATIKDGTII	527

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g05602	527	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	83	392	IPR029044	-
	Trre5g05602	527	CDD	ADP_Glucose_PP	97	358	-	-
	Trre5g05602	527	NCBIfam	glucose-1-phosphate adenylyltransferase	95	492	IPR011831	GO:0005978\|GO:0008878
	Trre5g05602	527	Gene3D	Hexapeptide repeat proteins	393	527	-	-
	Trre5g05602	527	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED	57	527	IPR011831	GO:0005978\|GO:0008878
	Trre5g05602	527	SUPERFAMILY	Trimeric LpxA-like enzymes	389	527	IPR011004	-
	Trre5g05602	527	ProSitePatterns	ADP-glucose pyrophosphorylase signature 3.	306	316	IPR005836	GO:0005978\|GO:0008878
	Trre5g05602	527	ProSitePatterns	ADP-glucose pyrophosphorylase signature 2.	191	199	IPR005836	GO:0005978\|GO:0008878
	Trre5g05602	527	ProSitePatterns	ADP-glucose pyrophosphorylase signature 1.	100	119	IPR005836	GO:0005978\|GO:0008878
	Trre5g05602	527	FunFam	Glucose-1-phosphate adenylyltransferase	77	392	-	-
	Trre5g05602	527	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	94	488	IPR029044	-
	Trre5g05602	527	Pfam	Nucleotidyl transferase	96	373	IPR005835	GO:0009058
	Trre5g05602	527	CDD	LbH_G1P_AT_C	395	521	-	-
	Trre5g05602	527	FunFam	Glucose-1-phosphate adenylyltransferase	393	527	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g05602	Trre-Chr5	56230146	56233907	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g05602	K00975		-	gmx:100793757	859.366

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre5g05602	5	56230146	56233907	Trre5g05602	5	56230146	56233907	ECH