Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05601 ATGAAGCACAAGTTCTCTCTAGTTTTCTTAGTTTTCCATGTGATCTTACTACTCAACGTAGAAGCAGCAGATGATGAGTTTATCAAAACAAGAGGAGTGCAGCTTATGCTTAATGGTAGCCCCTATTATGCCAATGGTTTTAATGCATATTGGTTAATGTATTTTGCTTCTGATCCATCTCAAAGAAACAAAGTCTCATCAACGTTTCAAGAAGCTGCAAATCATGGACTCAACATAGCCAGAACTTGGGCTTTCAGTGATGGTGGATATAAACCACTGCAATCCTCTCCTGGATCCTACAATGAGGAAATGTTCCAGGGGTTGGACTTTGTGCTAGCTGAAGCTAGAAAATATGGGATCAAGGTGATTTTGAGTTTGGTGAACAACTATGATAATTTTGGAGGAAAGAAACAATATGTGGAATGGGCAAGGAGTCAAGGCCAGTCCATAAATTCTGAAGATGATTTCTTCACTAATCCTGTTGTGAAGGGTTACTATAAAAACCACATCAAGAGTGTGCTTACAAGACGTAACAGCTTGAGTGGAGTTTCTTACAAAGATGACCCTACAATAATGGCTTGGGAGCTTATGAATGAGATTAGATGCCCTTCAGATCACTCGGGAAATACGGTTCAGGATTGGATTAGTGAGATGGCATCTTACTTGAAATCCATAGATGGAAACCATTTGCTTGAAGCTGGTTTGGAAGGTTTCTACGGGCAGTCAAATAGAGACTCTAATCCTAACTTCCAAGTAGGAACCGATTTCATTGCAAACAATCAAATTCCCACCATCGATTTTGCAACACTACACTCCTACCCTGATCAATGGCTATCGAATAAAGGCTATGAAGACCAAATCTCTTTCTTACATGATTGGCTCAATGAGCACATCCAAGATGCACAGAACATCCTTCACAAGCCACTTCTATTTGCAGAGTTTGGCATTTCCACTAAAAACTTAGGCAATAATAATAACTCAACACTGAGGGATCAGTTTTTCAATACTGTTTATTCAGCTATATATTCATCAGCAAGTGGTGGCGGAGCCACTGTTGGTGGTTTATTTTGGCAACTTCTTGCTGAAGGAATGGATTCTTTCCGAGACGATTATGAGGTTATATTAGCTCAGAGCTCCTCAACAGCTACCTTGATTGCTCAAGAGTCTCAGAAACTAAGGCGAATTCGCAAGATGTACGCCAGACTCAAAAACATTGACAAATGGAACAAATCAAAAAGAAATTAG 1245 0.3976 MKHKFSLVFLVFHVILLLNVEAADDEFIKTRGVQLMLNGSPYYANGFNAYWLMYFASDPSQRNKVSSTFQEAANHGLNIARTWAFSDGGYKPLQSSPGSYNEEMFQGLDFVLAEARKYGIKVILSLVNNYDNFGGKKQYVEWARSQGQSINSEDDFFTNPVVKGYYKNHIKSVLTRRNSLSGVSYKDDPTIMAWELMNEIRCPSDHSGNTVQDWISEMASYLKSIDGNHLLEAGLEGFYGQSNRDSNPNFQVGTDFIANNQIPTIDFATLHSYPDQWLSNKGYEDQISFLHDWLNEHIQDAQNILHKPLLFAEFGISTKNLGNNNNSTLRDQFFNTVYSAIYSSASGGGATVGGLFWQLLAEGMDSFRDDYEVILAQSSSTATLIAQESQKLRRIRKMYARLKNIDKWNKSKRN 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05601 414 FunFam Mannan endo-1,4-beta-mannosidase 6 24 396 - -
Trre5g05601 414 Pfam Cellulase (glycosyl hydrolase family 5) 45 325 IPR001547 GO:0004553|GO:0071704
Trre5g05601 414 Coils Coil 385 405 - -
Trre5g05601 414 PANTHER - 9 411 IPR045053 GO:0004553
Trre5g05601 414 Gene3D Glycosidases 23 396 - -
Trre5g05601 414 SUPERFAMILY (Trans)glycosidases 27 382 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05601 Trre-Chr5 56221784 56226923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05601 27 412 Glycoside Hydrolase AT5G66460 64.524 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05601 K19355 - gmx:100794126 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05601 5 56221784 56226923 Trre5g05601 5 56221784 56226923 ECH