Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05600 ATGGTTGTGATCAGTGGTCACTGTTCTTCTTACTGCGCCGTTGCTTCACACAACAAACCCTACCTCTCACACACTCTTCGCAATTCTATTTCTATTTCTTCTTCTCCATTTCCACTCCCAAGAAAAGTATCATGCCTCGTCTCTCCTCCTCTCGCCGCCGAATCTCCTCTCACCGCGAAAGTTGGAAATGGGTTGAAAGATTTTCTTCACATAGATGATTTTGATAAGGACACTATTTTGAAGATATTAGATCGAGCTATTGAGGTTAAGACATTGTTGAAATCAGGGGACAGGTCATTTCGACCTTTTGAAGGGAAAACAATGTCAATGATTTTTGCTAAGCCATCTATTAGAACTAGGGTTTCTTTTGAGACTGGCTTTTCATTGTTAGGTGGTCATGCTATTTACTTAGGACCTGATGATATTCAAATGGGTAAGCGAGAGGAGACTCGCGATGTTGCTCGTGTTTTGTCTCGCTATAATGACATTATTATGGCTCGTGTTTTTTCTCATCAGGACATACTTGATCTTGCAAAGTATGCAACTGTCCCAGTCATCAATGGTTTGACAGACTACAATCATCCCTGCCAGATAATGGCCGATGCGCTTACTATGATTGAGCACATAGGTCGGTTTGAAGGAACCAAGGTTGTCTACGTTGGAGATGGAAACAATATTGTCCACTCATGGTTGTTGTTAGCAGCTGTAGTTCCTTTTCACTTCGTCTGTGCATGTCCAAAAGGTTTTGAACCTGATGCAAAAACAGTTGAGAAGGCAAGGAAGGCTGGAATAAGCAAGATTGAGATAAGTAATGATCCCAAAGAAGCTGTTAGAGGAGCTGATGTTGTGTATTCAGATGTCTGGGCCAGCATGGGGCAAAAAGAAGAAGCTGCATACCGTCGCCAAGTGTTTAAAGGATTTCAGGTGGATCAAAGTCTTATGGATGCGGCTGGTTCAAAGGCGTTTTTCATGCACTGCTTACCAGCGGAGAGAGGGGTGGAGGTGACTGACGAAGTTGTAGAAGCTCCATATTCAATAGTCTTCCCTCAAGCTGAGAACCGAATGCATGCACAGAATGCTATAATGCTCCATGTACTTGGCAAGTAG 1107 0.4309 MVVISGHCSSYCAVASHNKPYLSHTLRNSISISSSPFPLPRKVSCLVSPPLAAESPLTAKVGNGLKDFLHIDDFDKDTILKILDRAIEVKTLLKSGDRSFRPFEGKTMSMIFAKPSIRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDVARVLSRYNDIIMARVFSHQDILDLAKYATVPVINGLTDYNHPCQIMADALTMIEHIGRFEGTKVVYVGDGNNIVHSWLLLAAVVPFHFVCACPKGFEPDAKTVEKARKAGISKIEISNDPKEAVRGADVVYSDVWASMGQKEEAAYRRQVFKGFQVDQSLMDAAGSKAFFMHCLPAERGVEVTDEVVEAPYSIVFPQAENRMHAQNAIMLHVLGK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05600 368 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 66 207 IPR006132 GO:0006520|GO:0016743
Trre5g05600 368 NCBIfam ornithine carbamoyltransferase 66 366 IPR002292 GO:0016743
Trre5g05600 368 Gene3D Aspartate/ornithine carbamoyltransferase 197 362 IPR036901 GO:0006520|GO:0016597|GO:0016743
Trre5g05600 368 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 65 368 - -
Trre5g05600 368 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 213 364 IPR006131 GO:0006520|GO:0016597|GO:0016743
Trre5g05600 368 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 65 367 IPR036901 GO:0006520|GO:0016597|GO:0016743
Trre5g05600 368 Hamap Ornithine carbamoyltransferase, catabolic [argI]. 65 367 IPR024904 GO:0004585|GO:0006591
Trre5g05600 368 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 331 354 IPR006130 GO:0006520|GO:0016597|GO:0016743
Trre5g05600 368 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 112 131 IPR006130 GO:0006520|GO:0016597|GO:0016743
Trre5g05600 368 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 319 328 IPR006130 GO:0006520|GO:0016597|GO:0016743
Trre5g05600 368 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 194 205 IPR006130 GO:0006520|GO:0016597|GO:0016743
Trre5g05600 368 FunFam ornithine carbamoyltransferase, chloroplastic 66 201 - -
Trre5g05600 368 PRINTS Ornithine carbamoyltransferase signature 143 156 IPR002292 GO:0016743
Trre5g05600 368 PRINTS Ornithine carbamoyltransferase signature 345 356 IPR002292 GO:0016743
Trre5g05600 368 PRINTS Ornithine carbamoyltransferase signature 110 124 IPR002292 GO:0016743
Trre5g05600 368 PRINTS Ornithine carbamoyltransferase signature 183 197 IPR002292 GO:0016743
Trre5g05600 368 PRINTS Ornithine carbamoyltransferase signature 283 293 IPR002292 GO:0016743
Trre5g05600 368 FunFam Ornithine carbamoyltransferase 202 353 - -
Trre5g05600 368 Gene3D Aspartate/ornithine carbamoyltransferase 66 196 IPR036901 GO:0006520|GO:0016597|GO:0016743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05600 Trre-Chr5 56214108 56217257 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05600 K00611 - gmx:100796780 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05600 5 56214108 56217257 Trre5g05600 5 56214108 56217257 ECH