Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05583 ATGGTTCAGTGCAGTTCGAACTATAGTTTGGTTCAGTTAACTGGATTTTTGAACACCCCTATTGAAGATGAAGAATTTCCGTACACCCAGTTTTTGTTAAAACAGAATATCCTTTCTCCTAACCCTAACGGTTACCGTCAGATTAATCTTCAATTGAGAAATCCCTCACATATGGGCGAAGATACACAACAACAACAACAACAACTTCAACCACAATCCCTAACCGAAACACATATTCAACCACCACAGCCTCCGCCGCAAGAGGCTTCTTCCGACATCAACGTCACCAACGTCGCCGGAGTCGACACTATTATTCCTGTTGAGTCCGAACTCACCAATGTTCCGCCACACACCAATTCCCCGGCAACAAAAATCCCTCTCCGTCCTCGTAAGATCCGGAAAGTCTCACCGGACCCGACAACCGCCGAATCTCAAACGGAAACCCCTAAATCAACCAATTCAACCGCCGCTGGAAAATCTTGTGGAAGGAACAACAAAACGGTTCAACCGTTACGATCCCTATCTGCTCCGAGAATTGTAGCTAGGTCACTTTCTTGTGAAGGTGAAGTTGAGATCGCAATTCGTTACCTTCGTAACGCAGACCCGCTACTTTCCCCTCTAATCGACATTCACCAACCACCTACCTTCGATAATTTCCATTCACCATTCCTTGCCCTAACTCGTAGCATTTTGTATCAACAACTCGCGTTTAAAGCTGGAACTTCGATCTATACACGGTTCATTGCTCTTTGTGGTGGTGAAGCTGGTGTTGTTCCTGATACTGTTCTTGCATTAAATGCACAACAGCTTCGTCAAATAGGGGTTTCTGGGAGAAAGGCGAGTTATCTTCACGATTTGGCTAGGAAGTATCAGAATGGGATACTTTCTGATTCCGCCATTGTAAATATGGATGATAAGTCACTTTTCACGATGCTTACTATGGTTAATGGGATTGGTTCTTGGTCTGTTCATATGTTTATGATTTTCTCGCTTCATAGACCTGATGTTCTACCGATTAATGATCTTGGTGTTCGGAAAGGGGTTCAGATTCTTTATAATCTTGATGACTTGCCTCGACCGTCTCAGATGGATCAATTGTGTGAGAAGTGGAGGCCTTATCGCTCTGTTGCTTCGTGGTATTTGTGGAGGTTTGTTGAAGCCAAGGGAACTCCTTCGAGTGCTGTGGCTGTTGCCACTGGTGCTGGCTTGCAGCAACACCTGGAGCAGCACCAACAACAACAGCAGCAACATCCTTCACAACCACAGCTTATGGATCCCATGAATAGCATGTTCAATATCGGGGCTGCCTGTGCTTGGGGACAGTGA 1326 0.454 MVQCSSNYSLVQLTGFLNTPIEDEEFPYTQFLLKQNILSPNPNGYRQINLQLRNPSHMGEDTQQQQQQLQPQSLTETHIQPPQPPPQEASSDINVTNVAGVDTIIPVESELTNVPPHTNSPATKIPLRPRKIRKVSPDPTTAESQTETPKSTNSTAAGKSCGRNNKTVQPLRSLSAPRIVARSLSCEGEVEIAIRYLRNADPLLSPLIDIHQPPTFDNFHSPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPDTVLALNAQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQILYNLDDLPRPSQMDQLCEKWRPYRSVASWYLWRFVEAKGTPSSAVAVATGAGLQQHLEQHQQQQQQHPSQPQLMDPMNSMFNIGAACAWGQ 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05583 441 FunFam Probable DNA-3-methyladenine glycosylase 2 319 383 - -
Trre5g05583 441 Gene3D - 196 383 - -
Trre5g05583 441 Pfam HhH-GPD superfamily base excision DNA repair protein 228 371 IPR003265 GO:0006284
Trre5g05583 441 SMART endo3end 231 386 IPR003265 GO:0006284
Trre5g05583 441 SUPERFAMILY DNA-glycosylase 212 384 IPR011257 GO:0003824|GO:0006281
Trre5g05583 441 MobiDBLite consensus disorder prediction 138 168 - -
Trre5g05583 441 MobiDBLite consensus disorder prediction 57 92 - -
Trre5g05583 441 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 88 394 - -
Trre5g05583 441 MobiDBLite consensus disorder prediction 57 77 - -
Trre5g05583 441 MobiDBLite consensus disorder prediction 406 425 - -
Trre5g05583 441 FunFam DNA-3-methyladenine glycosylase II 219 333 - -
Trre5g05583 441 CDD ENDO3c 223 384 IPR003265 GO:0006284
Trre5g05583 441 Gene3D Hypothetical protein; domain 2 220 333 - -
Trre5g05583 441 MobiDBLite consensus disorder prediction 109 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05583 Trre-Chr5 56158546 56162313 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05583 K01247 - gmx:100790760 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05583 5 56158546 56162313 Trre5g05583 5 56158546 56162313 ECH