Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05576 ATGTCTGATCAAGTTAATGGCTTGCAAGACAACCAAGCTTGGCCAGAGCTAAACCTTCCAGACTTGTTACATAGCGACACTGTTCGACAAGTTCATGCAACAATTGAAAAGGAATGGGATTTCCTTCAAAGGTCAGCTTGCCAAACGGCTGCTGGTAGGGCTATGTGGAAGCATGTTATCCATGATCCACTGGCTGCTTTACTTGCGGGGGAGACTTATTTGAGAAACCTTCATGAAAAGATGAGGAAAGATCATATCAACAATGCTCATGAAACTTCTGGAGTGATACTTGCAGTTCGAACCCTTTGGTTTGATTCTAGGCTTGAAGATTTTCTCAATTCCCCAAACGGCAGAGAAGCACAGGTTGTTCTACTAGGTGCAGGAATGGACACAAGAGCATATCGTTTGAGTTGCTTAAAGGACAGCAATGTCTTTGAGGTTGACTTTCCCGAAGTCTTGGAGGTGAAGAGCACTATTCTGCAAGCAGCTAAGGAATCCGCATACGAGTCACAATGTAGTGTATCCAAAGCAAAATCATTAACCAGAGTAGCAGCTGACATAAGAGAAAATGATTGGATGGAAAAGCTTCAAAATGCAGGTTTCTTGCCACAGAAGAGCACAGTTTGGATTCTAGAAGGTATCCTGTACTACCTCGCCCAATCCAACGCCATGCAACTGCTGAGGATTTTAGCTAACAATTGCAACTTAACCCACACAGTCATCTTAGGAGACTTTATGAATAAGTCATCAACCACGCTATCCAATTCAGTATTCCAATTTTACAGTGATTGGCCAGATCAACTTTTGCCATCTATTGGCTTCAGTCATGTAAAACTTTCACAAATTGGAGACCCAGATGCCCATTTCGGCCTCTTGAATGATCCGTTAAATCTCTTCAACAAGCTCCGCAGCTTGCCTAGGTCATTACAAACCAATCCAGATGACGGAACACCATGCTGTCGCTTGTATTTGGTGGAAGCTTCTGGTTCACCCAATCAAAGTTCTGCGCATAATGAGTCAGACAGTCACTCCTGA 1035 0.4338 MSDQVNGLQDNQAWPELNLPDLLHSDTVRQVHATIEKEWDFLQRSACQTAAGRAMWKHVIHDPLAALLAGETYLRNLHEKMRKDHINNAHETSGVILAVRTLWFDSRLEDFLNSPNGREAQVVLLGAGMDTRAYRLSCLKDSNVFEVDFPEVLEVKSTILQAAKESAYESQCSVSKAKSLTRVAADIRENDWMEKLQNAGFLPQKSTVWILEGILYYLAQSNAMQLLRILANNCNLTHTVILGDFMNKSSTTLSNSVFQFYSDWPDQLLPSIGFSHVKLSQIGDPDAHFGLLNDPLNLFNKLRSLPRSLQTNPDDGTPCCRLYLVEASGSPNQSSAHNESDSHS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05576 344 NCBIfam SAM-dependent methyltransferase 50 235 IPR011610 GO:0008168
Trre5g05576 344 Gene3D Vaccinia Virus protein VP39 36 290 IPR029063 -
Trre5g05576 344 Pfam Leucine carboxyl methyltransferase 46 229 IPR007213 GO:0008168|GO:0032259
Trre5g05576 344 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE YKTD-RELATED 13 310 - -
Trre5g05576 344 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 43 325 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05576 Trre-Chr5 56117841 56119423 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05576 - - pvu:PHAVU_009G057800g 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05576 5 56117841 56119423 Trre5g05576 5 56117841 56119423 ECH