Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05575 ATGGCGGCAGATGTAGGTTGCTGTGGAACTAAATTCTGGCTGTACATAGTTGTGATCGTAGGTTTGGTATGTTTCGCTGGTCTCATGGCTGGTCTCACTCTTGGTCTCATGTCTTTAGGACTCGTCGACCTCGAAGTTCTCATCAAATCCGGTCGTCCTCAACATCGTATCCATGCCGCCAAAATTTTCCCAGTGGTTAAGAATCAGCATCTTTTGCTTTGCACTCTTTTAATTGGAAATTCCTTAGCAATGGAGACTCTTCCTATTTTTCTTGATGCTATTGTGCCTCCTTATGCTGCTGTTTTGATTTCGGTCACACTAATCCTCATCTTTGGAGAGATATTGCCTCAAGCAGTTTGTACTCGATATGGATTGATGGTTGGAGCAACGCTAGCCCCGCTTGTTCGTGTTCTTCTTCTAGTATTTTATCCCATCGCTTATCCCATCAGTAAGGTGCTTGATTGGATGTTGGGTAAAGGAAAAGCTGCTCTTTTAAAGAGGGCAGAACTCAAGACCTTTGTGAATTTTCATGGGAATGAGGCCGGGAAAGGAGGAGATTTAACGCACGATGAGACAACCATCATAGCCGGTGCGCTTGAATTGACTGAAAAGACTGCAAAAGATGCCATGACTCCCATATCAAAGGCATTTTCCCTTGATCTGGATGCAACTCTAAATTTGGAGACCCTGAATTCTATAATGACAATGGGTCATAGCAGAGTCCCAGTTTATGCGGGAGAGCGGACAAACATTATGGGACTTGTTCTGGTTAAAAATCTCTTTATGGTTGATTCAAAGGCTGGAGTTTCTCTAAGAAAAATGATGATCAGAAAAATTCCTCGTGTTTCAGAGAATATGCCTCTGTATGATATACTGAATGAATTTCAGAAGGGTCACAGTCATATTGCAGTTGTATATAGGGATCTAAATGATAAAAAAGATGCATCCAAAAAAATTAAAGACAAGGACCAACTTGAGTTTAAGGACAGCTGTAGGAACAAAGGAAAAAGTGCTCCCTTGGATAAAGGTGCAATGTTGGAGTCACGCGATACTTTGACTGCTGGTAATAAGATTGATGGCGGTCCACAGGTGAAGAAAAGTCCACCAGCAACACCTGCTTTTAAAAAGCGGCATAGGGGTTGTTCATATTGCATCCTGGACCTTGATAATGCTCCCTTGCCCGTATTTCCACCCAATGAAGAGGTTGTTGGTGTTATTTCAATGGAAGATGTAATTGAAGAGCTTCTTCAGGAGGAGATACTTGATGAAACTGATGAATATGTCAATATCCATAACAAGATAAAAGTTAACATGAATGCTTCTAAGGAGAAGACTCCTGATGCAAATGTGTTGCAGCCTTCTAATTTAGCAGTTCAAGGACATACACCAACAAATTCGATTTCCACAGCTACTTCTGCAACGGGCTCACCTACCACCATCGATCAAATCTCTGAGAGTGAGTCACTCAGGAATCAATAA 1479 0.4178 MAADVGCCGTKFWLYIVVIVGLVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQHRIHAAKIFPVVKNQHLLLCTLLIGNSLAMETLPIFLDAIVPPYAAVLISVTLILIFGEILPQAVCTRYGLMVGATLAPLVRVLLLVFYPIAYPISKVLDWMLGKGKAALLKRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLNLETLNSIMTMGHSRVPVYAGERTNIMGLVLVKNLFMVDSKAGVSLRKMMIRKIPRVSENMPLYDILNEFQKGHSHIAVVYRDLNDKKDASKKIKDKDQLEFKDSCRNKGKSAPLDKGAMLESRDTLTAGNKIDGGPQVKKSPPATPAFKKRHRGCSYCILDLDNAPLPVFPPNEEVVGVISMEDVIEELLQEEILDETDEYVNIHNKIKVNMNASKEKTPDANVLQPSNLAVQGHTPTNSISTATSATGSPTTIDQISESESLRNQ 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05575 492 PANTHER METAL TRANSPORTER CNNM 3 454 IPR045095 GO:0010960
Trre5g05575 492 FunFam DUF21 domain-containing protein 189 324 - -
Trre5g05575 492 MobiDBLite consensus disorder prediction 353 373 - -
Trre5g05575 492 Pfam CBS domain 273 308 IPR000644 -
Trre5g05575 492 SUPERFAMILY CBS-domain pair 194 417 IPR046342 -
Trre5g05575 492 MobiDBLite consensus disorder prediction 457 492 - -
Trre5g05575 492 CDD CBS_pair_CorC_HlyC_assoc 205 306 IPR044751 -
Trre5g05575 492 Gene3D - 376 423 IPR046342 -
Trre5g05575 492 Pfam Cyclin M transmembrane N-terminal domain 18 189 IPR002550 -
Trre5g05575 492 Gene3D - 189 323 IPR046342 -
Trre5g05575 492 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05575 Trre-Chr5 56109704 56113964 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05575 K16302 - gmx:100804572 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05575 5 56109704 56113964 Trre5g05575 5 56109704 56113964 ECH