Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05565 ATGCCCATAGCCACGAAGCTTGAATCTCCTCGTGCTACTGAACCGCGAGCCATTCTAAAACCAGGTGGAAACATAGTTACAACGGTTCATGAAGAAACAACCAAACGTAAGAAGGAGAATTTGAAGAAGAAAACACAAGGACCAAGAAAACAAGTGCCGGAAATTTGTGATTCCGTTGTTGTCGGAAGTACTAATAAGGTGTCTTCGGACACCACATGTTCCTCAGATTCATCTTCTTCTGGTAATAATTCATTGGTCAAAAAGGTCAACGCTCAGAATGGAAATGGAACAAGTGCAAAGATGAAGCGCAACGGGTTCAAGATGAAGACGGATGGTTCCCACGTGTCTCCGGGTCATAAGGACTCAGCACCGTCCAAAAGATGCGATTGGATCACACCTAATTCTGACCCTCTTTATAGTTCTTTCCACGACGAAGAATGGGGTGTTCCAGTTATTGATGATGATAGAAAGCTATTTGAGCTTCTAGTATATTCACAAGCATTAGCAGAACACACTTGGCCAGCAATTCTTAACAACAGAGACATATTCAGGAAGCTTTTTGAAAATTTTGACCCATCCTCAATTGCTCAGTTTACTGAGAAGAATTTGGTAACACCAAAAATAAACGGTAATCCTTTGTTATCAGAACAAAAACTCCGCGCCATTGTGGAAAATGCTAAACAATTACTCAAGGTTCAGCTGGAGTTTGGTTCATTCAGCAATTACTGTTGGAAATTTGTAAACCACAAGCCAATAAGAAATGAATTTCGATATGGGCGACAAATACCTGTGAAGACTCCAAAAGCAGAACTCATTAGCAAGGATATGATGCGACGAGGTTTCCAATGCGTTGGACCAAAAGTAGTTTATTCATTCATGCAAGTATCCGGACTCGTTAATGATCATCTATTAACATGCTTCAGGCACCAAGAATGCAACATGACAATCAAAAACGAAATTAAAACTGAGGTTAAGGAAACAAAGGTATAA 990 0.402 MPIATKLESPRATEPRAILKPGGNIVTTVHEETTKRKKENLKKKTQGPRKQVPEICDSVVVGSTNKVSSDTTCSSDSSSSGNNSLVKKVNAQNGNGTSAKMKRNGFKMKTDGSHVSPGHKDSAPSKRCDWITPNSDPLYSSFHDEEWGVPVIDDDRKLFELLVYSQALAEHTWPAILNNRDIFRKLFENFDPSSIAQFTEKNLVTPKINGNPLLSEQKLRAIVENAKQLLKVQLEFGSFSNYCWKFVNHKPIRNEFRYGRQIPVKTPKAELISKDMMRRGFQCVGPKVVYSFMQVSGLVNDHLLTCFRHQECNMTIKNEIKTEVKETKV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05565 329 SUPERFAMILY DNA-glycosylase 126 312 IPR011257 GO:0003824|GO:0006281
Trre5g05565 329 Gene3D Hypothetical protein; domain 2 125 310 - -
Trre5g05565 329 MobiDBLite consensus disorder prediction 1 129 - -
Trre5g05565 329 MobiDBLite consensus disorder prediction 104 126 - -
Trre5g05565 329 PANTHER OS04G0501200 PROTEIN 15 319 - -
Trre5g05565 329 MobiDBLite consensus disorder prediction 61 100 - -
Trre5g05565 329 Pfam Methyladenine glycosylase 134 309 IPR005019 GO:0006284|GO:0008725
Trre5g05565 329 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05565 Trre-Chr5 56037081 56039029 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05565 K01246 - gmx:100801163 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05565 5 56037081 56039029 Trre5g05565 5 56037081 56039029 ECH