Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05537 ATGGGTTCTGTTGTTATAGATGACGATGTTTCACCCATACCAGAAGTTCGGGCCGTGGTATCAAACTACGATGACCCGAACCAACCGGTATGGACGTTTCGAATGTGGACATTGGGGATTTCATCAGTAGTATTGCTTTCTTACTTGAACACATTTTTTAATTACAGAAGTGAGCCTTTACTGGTGACAATGATATCGGTGCAAGTTGCAACACTTCCTTTCGGTAAATTCATGGCTAAGGTGCTTCCGACGAAAAAATTTCGGATTATCGGGTTTGGGGATAGAGAATTTTCATTGAATCCTGGTCCTTTTAACATGAAAGAGCATGTGCTTATTTCAATATTTGGGAATGCTGGTGCTGCGTTTGGAAATGGTTTTGCTTATGCTGTTAGTATTGTTGATATTATTCGTGCTTTTTACCATCGGAAGATTACATTCGTTGCTAGTTTGCTTCTTGTCTTGACTACTCAGGTATTGGGGTATGGATGGGCGGGCATAATGAGGAAATACGTGGTGGATCCAGCGGAGATGTGGTGGCCGGCCACTCTAATGCAAGTCTCTTTGTTCAGAGCTTTACATGAAAAAGATGAGAAACGAATGTCAAAAGAGAAGTTCTTTTTTATTGCATTTATTTGTAGCTTTGCATGGTATGTGATTCCAGGGTACCTCTTCACAACATTATCAATAATTTCATGGGTTTGTTGGATATTTCCAAATTCAGTAACAGCCCATCAAATTGGATCTGGAAAACTTGGGCTTGGTTTTGGCTCATTTTCTCTTGACTGGACCACTGTTGCTGCATTCAATGGGAATCCACTTGTTACACCAATTTTTGCAACGTTTAATATCCTTGTTGGTTACATTTTATTAGTCTACATGCTTATTCCTATGGCTTATTGGGGATTAAATCTCTATAATGCCAAAAACTTCCCCATATTCTCTTCTAAGCTATTCACTGCACAAGGTGTGAGATATAATGTGTCAGCTATTGTGAATGATAAGTTTGAGATAGATATGGATGCATATCTTAAACAAGGTCACATCAATATGACTATCTTCTTTGCTATTAGCTATGGTCTTGGCTTTGCTGCCATTATCTCCTCCCTCACTCATGTTGCCATATTTAATGGAAAGGAGATATATCATCAATTTATATCTTCTCGAACGGGAAAGGAAGACATTCACACAAGAATGATGAAGAAGTATAAGGACATACCTAATTGGTGGTTTCATGTTACACTTTTGGTCTCATTTCTAATTGCACTTTCATTGTGTATATTCATGAAAGAACAAGTACAAATGCCATGGTGGGCACTCATCTTTGCATCAGGACTTGCACTCATTTTTACTCTTCCCATCAGTATCATAACTGCCACTACTAATATGACTCCTGGTTTGAATATTATTACTGAGTATATAATGGGTGTGATTTCGCCTGGATTACCAATAGCCAATGTTTGCTTCAAGACTTACGGATATATGAGTATGTCTCAGGCCGTTTCTTTTCTATCAGATTTCAAACTAGGACATTACATGAAGATTCCACCAAGATCAATGTTCATAGTTCAGATTATAGGGACTCTTATAGCTGGAACTGTGGATGTTGGTGTGGCATGGTGGTTGCTAGGTTCAATACAAAACATATGTCACGAAGAACTCCTACCACCTGGTAGTCCATGGACATGCCCAGGTGATAATGTGTTCTTCGATGCATCCGTTATATGGGGTTTGGTCGGCCCAAAAAGAATTTTTGGCCCACTTGGAAACTACTCAAAGTTGAATTGGTTCTTCTTAATTGGAGCATTAGGCCCATTAATCGTATGGGCCCTTATGAAAGCCTTTCCAAATAAAAAATGGTTATCACACATTCACATTCCTGTTTTACTTGGAGCAACTGCACAAATGCCACCAGCTAGCACAGTGAATTTCAATTCATGGCTTATTGTTGCAATCATATTTAACTATTTTGTGTATAAATATCATAAGAAATGGTGGGAAAGGTACAATTATATTCTTGCTGCTTCTTTAGATGCTGGATTGGCTTTCATGACTATTCTTCTCTTTTTTACGGTTAGTAATGGAGGAATAAGCTTGAATTGGTTGGGTCAAGATGAGCATTGTCCTCTTGCTACTTGTCCTACTGCTAAAGGAATAACTGCTGAGGGTTGTCCTACATTTTCATAA 2184 0.3864 MGSVVIDDDVSPIPEVRAVVSNYDDPNQPVWTFRMWTLGISSVVLLSYLNTFFNYRSEPLLVTMISVQVATLPFGKFMAKVLPTKKFRIIGFGDREFSLNPGPFNMKEHVLISIFGNAGAAFGNGFAYAVSIVDIIRAFYHRKITFVASLLLVLTTQVLGYGWAGIMRKYVVDPAEMWWPATLMQVSLFRALHEKDEKRMSKEKFFFIAFICSFAWYVIPGYLFTTLSIISWVCWIFPNSVTAHQIGSGKLGLGFGSFSLDWTTVAAFNGNPLVTPIFATFNILVGYILLVYMLIPMAYWGLNLYNAKNFPIFSSKLFTAQGVRYNVSAIVNDKFEIDMDAYLKQGHINMTIFFAISYGLGFAAIISSLTHVAIFNGKEIYHQFISSRTGKEDIHTRMMKKYKDIPNWWFHVTLLVSFLIALSLCIFMKEQVQMPWWALIFASGLALIFTLPISIITATTNMTPGLNIITEYIMGVISPGLPIANVCFKTYGYMSMSQAVSFLSDFKLGHYMKIPPRSMFIVQIIGTLIAGTVDVGVAWWLLGSIQNICHEELLPPGSPWTCPGDNVFFDASVIWGLVGPKRIFGPLGNYSKLNWFFLIGALGPLIVWALMKAFPNKKWLSHIHIPVLLGATAQMPPASTVNFNSWLIVAIIFNYFVYKYHKKWWERYNYILAASLDAGLAFMTILLFFTVSNGGISLNWLGQDEHCPLATCPTAKGITAEGCPTFS 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05537 727 Pfam OPT oligopeptide transporter protein 31 690 IPR004813 GO:0035673
Trre5g05537 727 PANTHER ISP4 LIKE PROTEIN 8 724 IPR004648 GO:0055085
Trre5g05537 727 NCBIfam OPT family oligopeptide transporter 14 691 IPR004813 GO:0035673
Trre5g05537 727 NCBIfam small oligopeptide transporter, OPT family 9 692 IPR004648 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05537 Trre-Chr5 55834934 55840401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05537 7 726 Organic Solute Cotransporters AT1G09930 68.283 0.0 1067
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05537 - - gmx:100785973 1161.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05537 5 55834934 55840401 Trre5g05537 5 55834934 55840401 ECH