Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05528 ATGGCCGTTTCAACCACTTTCTCCGGCCCCAAATTCGACTCTCTATTCCTCAAATCTTCAAGGTTGTTATCGTCACCCTCCGTTTCCAACCATATATCACTTCTCGGGAAACCTAGAACCACTATCATTCAAAAAGGGATTATTCGCTGTGATGCTCTAAATTCTTCTAATGGAGTAGTTAAGACCGTTGATGATGATCAAAGTAGCAGCACCATTTCTGCTCTTGAGCTTCTCAAAACTTCTGGAGCTGATAGGTACACAAAGGAAAGGAGCAGCATTGTCGTCATTGGGCTCAGTGTGCACACTTGTCCAGTGGAAATGCGTGAAAAACTTGCCATTCCTGAAGCAGAATGGCCTAGAGCTATTGCAGAGCTTTGCAGTCTCAATCATATTGAAGAAGCAGCTGTTCTGAGCACCTGCAACCGAATGGAGATATATGTGGTCGCTCTATCCCAACACCGTGGTGTCAAAGAGGTTATGGAATGGATGTCAAAAACAAGTTCCGTTCCTGTTTCAGACCTCTGCGAGCACCGGTTTTTACTTTACAACAAAGATGCCACACAGCACATTTTTCAAGTGTCAGCCGGTCTTGAGTCTCTGGTATTGGGAGAAGGTCAAATCCTTTCTCAAGTTAAACAAGTTGTCAAAGTTGGACAAGGAGTTAATGGTTTTGGAAGAAACATTAGTGGTCTATTCAAGCATGCAATAACTGTTGGAAAAAGGGTTAGAGCGGAGACCAATATTGCTGCTGGGGCAGTTTCTGTGAGCTCAGCTGCTGTTGAAATGGCCTACATGAAGCTACCCGAAGCCTCGCATGGTAATGCCAGGATGCTGGTTATAGGTGCTGGTAAGATGGGAAAGCTCGTGATCAAACATTTGGTTTCAAAAGGTTGTACAAGGATGGTTGTTGTCAATAGAACTGAGGAGAGAGTTGCTGCAATACGCGAAGAACTGAAGGATATTGAAATAATTTACAAACCTCTTTCAGAAATGCTCTCCTGTACCTGTGAAGCAGACGTTGTTTTCACCAGTACAGCATCAGAAAATCCATTATTCATGAAAGATGATGTCAAGGACCTTCCTCCAGCAAGTCAAGAGGTTGGAGACCGTCGCCTTTTCATTGACATTTCTGTTCCGCGAAATGTTGGTTCATGTGTCTCAGATATTGAATCTGTGCGAGTTTACAATGTTGATGACCTTAAAGAGGTTGTGGCTGCCAACAAAGAGGATCGATTAAGAAAAGCAAGAGAAGCGCAGGTGATCATTGCTGAAGAGTTAAAGCAATTTGAAGCTTGGAGGGACTCGCTGGAAACTGTTCCTACAATTAAAAAATTGAGAGCCTATGCTGAAAGGATCAGGGTTGCTGAGCTTGAGAAATGTTTGGGTAAGATGGGTGATGATATCTCAAAGAAGACGCGGAAAGCTGTGGATGATCTTAGTCGAGGTATTGTGAATAGGATGCTTCATGGTCCGATGCAACATTTGAGGTGTGATGGGAGTGACGATCGGACTCTAACTGAGACCCTTGAGAACATGCATGCTTTGAATAGAATGTTCAGCCTTGAGACTGAAATATCTGTTTTGGAGCAGAAGGTTCGAGCAAAGGTGGAACAAAACCAAAAGTAA 1626 0.4348 MAVSTTFSGPKFDSLFLKSSRLLSSPSVSNHISLLGKPRTTIIQKGIIRCDALNSSNGVVKTVDDDQSSSTISALELLKTSGADRYTKERSSIVVIGLSVHTCPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVMEWMSKTSSVPVSDLCEHRFLLYNKDATQHIFQVSAGLESLVLGEGQILSQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRAETNIAAGAVSVSSAAVEMAYMKLPEASHGNARMLVIGAGKMGKLVIKHLVSKGCTRMVVVNRTEERVAAIREELKDIEIIYKPLSEMLSCTCEADVVFTSTASENPLFMKDDVKDLPPASQEVGDRRLFIDISVPRNVGSCVSDIESVRVYNVDDLKEVVAANKEDRLRKAREAQVIIAEELKQFEAWRDSLETVPTIKKLRAYAERIRVAELEKCLGKMGDDISKKTRKAVDDLSRGIVNRMLHGPMQHLRCDGSDDRTLTETLENMHALNRMFSLETEISVLEQKVRAKVEQNQK 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05528 541 CDD NAD_bind_Glutamyl_tRNA_reduct 93 415 - -
Trre5g05528 541 Pfam Shikimate / quinate 5-dehydrogenase 267 403 IPR006151 -
Trre5g05528 541 Gene3D - 91 251 IPR036343 GO:0008883|GO:0033014|GO:0050661
Trre5g05528 541 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 96 246 IPR015895 GO:0008883|GO:0033014|GO:0050661
Trre5g05528 541 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 417 521 IPR015896 GO:0008883|GO:0033014|GO:0050661
Trre5g05528 541 ProSitePatterns Glutamyl-tRNA reductase signature. 189 212 IPR018214 GO:0008883
Trre5g05528 541 Gene3D - 252 404 - -
Trre5g05528 541 FunFam Glutamyl-tRNA reductase 92 251 - -
Trre5g05528 541 Coils Coil 304 324 - -
Trre5g05528 541 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 415 504 IPR036453 GO:0008883|GO:0033014|GO:0050661
Trre5g05528 541 FunFam Glutamyl-tRNA reductase 251 410 - -
Trre5g05528 541 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 4 538 - -
Trre5g05528 541 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 92 248 IPR036343 GO:0008883|GO:0033014|GO:0050661
Trre5g05528 541 NCBIfam glutamyl-tRNA reductase 93 503 IPR000343 GO:0008883|GO:0033014|GO:0050661
Trre5g05528 541 Hamap Glutamyl-tRNA reductase [hemA]. 92 519 IPR000343 GO:0008883|GO:0033014|GO:0050661
Trre5g05528 541 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 251 411 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05528 Trre-Chr5 55726730 55729301 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05528 K02492 - gmx:100782247 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05528 5 55726730 55729301 Trre5g05528 5 55726730 55729301 ECH