Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05523 ATGGCGTCATTCCGACGAACGTTATCACCGGCGTATCACGACCGTCACTATACAAACGGCTTATTTTCATCATCATCTCCATCTCACAAAGTTCCTTCTTCAAACATCAATTACTCTTCGCTAGCTTCTTCGTTTCAGAAATTAATCGGTGGCGTTTTCATGCGACGCTACAATCGAAAACTACAATGGCGTAAAGTTGCATTCAGGTGTGTCATTTTTTTCTTCGCTGGTTTCTTATTAGGAATGTTTCCTTTTGGTAATCTCATTCATGAAATTCCTCAACAACGCAATAACGACGTCGCTTTCGATATCAATAATACTCCACGCGCCGACGCGCGATTAATGCTCGATGATGATCGCTTTCCGCCGAAGCGCGTTAGTGTTAGTGATGTTGAAGATAAAGGTTTTGTGATTGATCCTATTAGTTTGAGTTTGAACATGAACGATGAGAAGAAGAAAGTGAAACTGAATGATGTGGTTGAATCTGGGAGGTTTGATTTTGCAGCAAGGAAGCAATTGATTGTGGTTACTCCGACTTATAATCGCGCTTTTCAGTCGTATTTTTTGAATAGATTAGGACAGGTTTTGAGGTTGGTGCCGCCGCCGCTACTTTGGGTGGTGGTGGAAATGAATTCTGCTTCAATGGAAACTGCTGAATTGTTGAGGAAAACGGGTGTCATGTATAGACATTTGGTGTGTAAAAAGAATTCAACTGATGTGAAAGATAGAGGTGTTCATCAGAGGAATACGGCGTTGGAGCATATTGAACATCATAAACTTGATGGGATTGTTTACTTTGCTGATGATGATAATGTATATTCTCTTGAGTTGTTTCAGACAATGAGAGATATCAGCCGTTTTGGCACTTGGCCGGTCGCCATGCTTGCACCAAGCAAGAACAAGGCTATTTTGGAGGGTCCGGTATGTAATGGAAGCCAAGTGATTGGGTGGCATACCAATGAGAAAAGTAAAAGACTTCGTAGATTTCATGTTGATATGTCTGGATTTGCATTCAATAGCACAATCCTGTGGGATCCAAAGCGGTGGCGACGCCCTACTTCAAATCCTATACGGCAACTAGACACAGTGAAAGAGGGTTTTCAGGAAACCACCTTTATAGAACAATTGGTAGAAGATGAGAATCAAATGGAAGGTTCACCACCTGGTTGCATGAAAATAATGAATTGGCATCTCCATTTGGATGTTCATAATGTAGTTTATCCAAAGGGTTGGATGCTTGAGAAAAACCTAGATGCTGTGATACCCATCAAGTAA 1275 0.4133 MASFRRTLSPAYHDRHYTNGLFSSSSPSHKVPSSNINYSSLASSFQKLIGGVFMRRYNRKLQWRKVAFRCVIFFFAGFLLGMFPFGNLIHEIPQQRNNDVAFDINNTPRADARLMLDDDRFPPKRVSVSDVEDKGFVIDPISLSLNMNDEKKKVKLNDVVESGRFDFAARKQLIVVTPTYNRAFQSYFLNRLGQVLRLVPPPLLWVVVEMNSASMETAELLRKTGVMYRHLVCKKNSTDVKDRGVHQRNTALEHIEHHKLDGIVYFADDDNVYSLELFQTMRDISRFGTWPVAMLAPSKNKAILEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPTSNPIRQLDTVKEGFQETTFIEQLVEDENQMEGSPPGCMKIMNWHLHLDVHNVVYPKGWMLEKNLDAVIPIK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05523 424 SUPERFAMILY Nucleotide-diphospho-sugar transferases 172 417 IPR029044 -
Trre5g05523 424 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 62 418 IPR005027 GO:0015018|GO:0016020
Trre5g05523 424 CDD GlcAT-I 173 401 IPR005027 GO:0015018|GO:0016020
Trre5g05523 424 FunFam Glycosyltransferases 172 414 - -
Trre5g05523 424 Pfam Glycosyltransferase family 43 192 400 IPR005027 GO:0015018|GO:0016020
Trre5g05523 424 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 172 418 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05523 Trre-Chr5 55687561 55690390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05523 1 424 Glycosyltransferase AT1G27600 58.508 4.10e-176 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05523 K20869 - gmx:100809892 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05523 5 55687561 55690390 Trre5g05523 5 55687561 55690390 ECH