Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05505 ATGACTAAGAGACCTAAGAGATCAGATTCAAATAGAAGAGGAAAACGAAGAAAACCGTCGGGTGTTTTTTCACCGTTGGATGTATCTGCTAGTGTTGTGTTCCGTTTACTATGTCCGGCTACTAGAATTGGCGGTGTAATTGGTAAAGGCGGTTCAATTATATCGCAAATTCGTCAAGAAACCGGTGTGAAAGTTAAGATTGAAGAGCCTGTCCCTGGGTGCGAAGAAAGGGTTATAACTTTTTTAGGTTCTGATAAAGAGAGTGAAGATGGTAGTGGTGAGCAAGGAAAGGAGGTTAATTATAATGATGAGAATGATGGGAAGGAGAAGGATGATGAGGGGAAAAGTAACGGGGATGATAATGAAGATAAAGATTCAGCTTCGGTTGAAGATTCGCAGAGCGAGAAGGGGTATTCGACTGCGACTATTCTGAGGGCTGTAACACTAGTTTTTGACAAGATGGTTGAAGGAATATTGGATATAGGTGAAGCTGGTGATGAAGGTATTAAAGATTCTTACTTTGCTTTAAGGCTACTCATCCTCTCTAATCAAGTTGGATGCATTTTGGGAAAGGGTGGCAGTGTGATAAAGAGAATGTCAGCTGAAAGTGGGGCACAGATTCGGATACTTGCTAAAGAAGAAATTCCCTCGTGTGCGTCGGATTCAGATGAGTTAGTTCAGATCACAGGTGGAGTAGAAGTTGTCAGGAAAGCTCTTCAATTTGTTTTTCAGCAGCTTTTGGAAAATACACCTCGTGATCATGAATCTCTGTCTAGCAATCTTACCGGGCCGTCATCTCATTCATATGGTCAATTCCCACCAAATAAACGCACTTTTTCTGGTCAAGGAGCATCTTTTGCTACTGGGCCAAATGAAATTCCTGTTTTCCACTCTGCTCCTATGATTCCCAAATTTCACGAAGGTGCTATCCATGGTCGCACGAGGCCTTCACCGGAAATACTCACTTTCCGTTTATTGTGTCCTTCCGAAAATGTAGGAAATTTAATTGGCAAAGGTGGATCAATTATAAAGACTATGCAACACGAGACAGCTAGTGAAATCAAGGTTATAGAACCCATTCCAGGTTCAGAGGACTGCATTATTGTCATATCTGGTCCAGCGCACCCAGATGATAGAATATCTCCTGTGCAAGAGGCTGTGTTTCGAGTGCAAAATAGAATATCCAGGGGCATACATGATGCCAAAGAGCACAGTATGTTAGCAAGGGTTATTGTTTCTTCCAATAATGTAGGTTGTCTCCTTGGGAAGGGTGGTTGCATCATAGCTGAAATGAGGCATTTATCAGGTGCCCATATTCGTATGTTGGGAAAGGATAAGGGTCCAAAGTGTGTTTCAGAAGAAGATGAAGTAATACAGGTTAGTGGAGAAATCGAGGCAGTGCATGATGCTCTTTTGCAAATAACCGCAAGATTAAAATATCATTTCTATCGCGATGTATTTCCTTCTGCCAATTTTCCTTCAAATTCTGCATTTCTGGATCAACATTCTCCATTCCCGCCTCATTTGGGAAGACGGGGACTTTCACCTCCCGGAATGTATTCTGACCGAGGTCCACATGTTGGTTTTCCCCTTGATGATCACCCTCCTTTTATGAATAATATATATAGACCAGGCATTCCTCCTCACATATCTGAAAGGAAGCCTTGGGGTCCTAAGGGAATACTTGAAGGCGGTGGTGGACATATGGGCTTGCCAGAATTTACAGGTGGTCCCCGAAGAATTTCTGGATTTGCAGGAGGAAGCCAACCAATTATTACAAATACCACTGTTGAAGTTGTTGTTCCTCGTGCTTTGGTGCCTGTAATATACGGAGAAGATGGTGAATGCCTGAAACAAATACTCCAGATCTCTGATGCAAATGTTATTATTACCGATCCCAAACCTGGAGCTGTGGAAACTAAAATTATAATATCTGGAACCCCGGAGCAAACTAATGCTGCACAGAGTCTTATTCAGGCATTTGTCATGAGTGAGAGGGAGTTTTGTTGA 2010 0.4234 MTKRPKRSDSNRRGKRRKPSGVFSPLDVSASVVFRLLCPATRIGGVIGKGGSIISQIRQETGVKVKIEEPVPGCEERVITFLGSDKESEDGSGEQGKEVNYNDENDGKEKDDEGKSNGDDNEDKDSASVEDSQSEKGYSTATILRAVTLVFDKMVEGILDIGEAGDEGIKDSYFALRLLILSNQVGCILGKGGSVIKRMSAESGAQIRILAKEEIPSCASDSDELVQITGGVEVVRKALQFVFQQLLENTPRDHESLSSNLTGPSSHSYGQFPPNKRTFSGQGASFATGPNEIPVFHSAPMIPKFHEGAIHGRTRPSPEILTFRLLCPSENVGNLIGKGGSIIKTMQHETASEIKVIEPIPGSEDCIIVISGPAHPDDRISPVQEAVFRVQNRISRGIHDAKEHSMLARVIVSSNNVGCLLGKGGCIIAEMRHLSGAHIRMLGKDKGPKCVSEEDEVIQVSGEIEAVHDALLQITARLKYHFYRDVFPSANFPSNSAFLDQHSPFPPHLGRRGLSPPGMYSDRGPHVGFPLDDHPPFMNNIYRPGIPPHISERKPWGPKGILEGGGGHMGLPEFTGGPRRISGFAGGSQPIITNTTVEVVVPRALVPVIYGEDGECLKQILQISDANVIITDPKPGAVETKIIISGTPEQTNAAQSLIQAFVMSEREFC 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05505 669 CDD KH-I_PEPPER_rpt1_like 32 85 - -
Trre5g05505 669 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 315 375 IPR036612 GO:0003723
Trre5g05505 669 CDD KH-I_PEPPER_rpt2_like 407 478 - -
Trre5g05505 669 ProSiteProfiles Type-1 KH domain profile. 173 242 - -
Trre5g05505 669 MobiDBLite consensus disorder prediction 253 284 - -
Trre5g05505 669 MobiDBLite consensus disorder prediction 1 19 - -
Trre5g05505 669 MobiDBLite consensus disorder prediction 83 131 - -
Trre5g05505 669 Gene3D K Homology domain, type 1 592 667 IPR036612 GO:0003723
Trre5g05505 669 MobiDBLite consensus disorder prediction 1 23 - -
Trre5g05505 669 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 400 487 IPR036612 GO:0003723
Trre5g05505 669 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 29 85 IPR036612 GO:0003723
Trre5g05505 669 SMART kh_6 404 479 IPR004087 GO:0003676
Trre5g05505 669 SMART kh_6 30 155 IPR004087 GO:0003676
Trre5g05505 669 SMART kh_6 172 247 IPR004087 GO:0003676
Trre5g05505 669 SMART kh_6 319 395 IPR004087 GO:0003676
Trre5g05505 669 SMART kh_6 593 663 IPR004087 GO:0003676
Trre5g05505 669 Gene3D K Homology domain, type 1 28 90 IPR036612 GO:0003723
Trre5g05505 669 Gene3D K Homology domain, type 1 319 397 IPR036612 GO:0003723
Trre5g05505 669 ProSiteProfiles Type-1 KH domain profile. 405 474 - -
Trre5g05505 669 MobiDBLite consensus disorder prediction 83 135 - -
Trre5g05505 669 ProSiteProfiles Type-1 KH domain profile. 594 658 - -
Trre5g05505 669 Pfam KH domain 596 659 IPR004088 GO:0003723
Trre5g05505 669 Pfam KH domain 34 87 IPR004088 GO:0003723
Trre5g05505 669 Pfam KH domain 409 475 IPR004088 GO:0003723
Trre5g05505 669 Pfam KH domain 322 374 IPR004088 GO:0003723
Trre5g05505 669 Pfam KH domain 177 240 IPR004088 GO:0003723
Trre5g05505 669 ProSiteProfiles Type-1 KH domain profile. 320 387 - -
Trre5g05505 669 CDD KH-I_PEPPER_rpt2_like 177 246 - -
Trre5g05505 669 ProSiteProfiles Type-1 KH domain profile. 31 88 - -
Trre5g05505 669 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 594 663 IPR036612 GO:0003723
Trre5g05505 669 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 315 658 - -
Trre5g05505 669 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 172 250 IPR036612 GO:0003723
Trre5g05505 669 CDD KH-I_PEPPER_rpt1_like 321 388 - -
Trre5g05505 669 Gene3D K Homology domain, type 1 171 250 IPR036612 GO:0003723
Trre5g05505 669 Gene3D K Homology domain, type 1 403 481 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05505 Trre-Chr5 55542147 55545789 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05505 K21444 - gmx:100777433 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05505 5 55542147 55545789 Trre5g05505 5 55542147 55545789 ECH