Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05490 ATGGCGTCAAGCGAATCTACTACTCAGATGAAGGTCGTCCATGGCGACGCTGGTTACATACTTGAAGACGTTCCTCATCTCTCCGACTACGTTTCAAATCTTCCTACATATCCGAATCCACTTCGATCCAATCCAGCTTACTCGGTTGTTAAGCAGTATTTCGTTCACATGGAAGATACCGTTCCTCAGAAGGTTGTTGTCCACAAGGATGGTCCTAGAGGTGTTCATTTTCGGCGTGCAGGACCTCGACAAAAGGTATATTTTAGATCAGATGATGTCGTTGCGTGTATTGTCACTTGTGGTGGTCTCTGCCCTGGCCTCAACACTGTCATAAGGGAAATTGTCTGTGGCCTTTCTTACATGTACGGTGTCGACAAAGTCCTTGGCATAGATGGTGGTTATAGAGGTTTTTATTCAAAGAACACCATTGATTTAACTCCTAAAGTGGTCAATGACATCCATAAGCGTGGAGGAACAATTCTTGGGACATCCCGAGGTGGGCATGATACTAGCAAGATAGTTGACAGCATCCAGGATCGGGGAATTAATCAGGTTTATATTATTGGAGGGGATGGAACACAACGAGGAGCGGCTGTGATTTACGAGGAAGTTAGACGGCGTGGTCTGAAAGTATCAATTGCTGGAATTCCTAAAACCATAGATAATGACATCCCGGTTATTGACAGGTCCTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGTGCCATTAATGCAGCGCATGTTGAAGCTGAAAGTGTTGAGAATGGTATTGGCGTTGTAAAGCTAATGGGTCGATATAGTGGTTTTATTGCGATGTATGCTACTCTTGCTAGCAGAGATGTGGACTGTTGCTTGATTCCAGAGTCACCTTTCCACCTTGAAGGAAAGGGAGGACTTTTTGAATTTACCAAGAAAAGGCTGAAAGAAAATGGACATATGGTCATAGTCATAGCTGAGGGTGCAGGGCAAGATCTTCTTACAGAAAGCATGCAAGACGCGGACCAAAAGGATGCTTCTGGAAACAAGCTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAGGATCATTTTGCAAAGGAGAATAAGATGGCCATCGTTCTTAAATATATAGATCCAACTTACATGATCCGGGCAATTCCAAGCAATGCATCGGACAGTGTTTACTGCACACTTCTTGCTCAAAGTGCAGTTCATGGTGCAATGGCAGGATATACTGGATTCACGGCTGGACTTGTCAATGGCAGGCATACTTATATTCCATTCAACAGAATCACTGAGAGGATGAACAAGGTTGTGATTACTGACAGAATGTGGGCAAGGCTGCTTTCTTCAACCAACCAACCAAGCTTTTTGAAACCCAAAGATGTTCATGAAGTCAAGAAAGCAGAACAACCTCCAGCTCAGTTGTTAGAAGGGGGCAATTGCAATGGTGGTGCTGAGGAAGCGAAGAAAGTAGAACAAATTCCCACACAGTTGTTAGAAGAGGATAATAGCAAAGATAAACTAAAATAA 1521 0.4346 MASSESTTQMKVVHGDAGYILEDVPHLSDYVSNLPTYPNPLRSNPAYSVVKQYFVHMEDTVPQKVVVHKDGPRGVHFRRAGPRQKVYFRSDDVVACIVTCGGLCPGLNTVIREIVCGLSYMYGVDKVLGIDGGYRGFYSKNTIDLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQRGAAVIYEEVRRRGLKVSIAGIPKTIDNDIPVIDRSFGFDTAVEEAQRAINAAHVEAESVENGIGVVKLMGRYSGFIAMYATLASRDVDCCLIPESPFHLEGKGGLFEFTKKRLKENGHMVIVIAEGAGQDLLTESMQDADQKDASGNKLLQDVGLWISHKIKDHFAKENKMAIVLKYIDPTYMIRAIPSNASDSVYCTLLAQSAVHGAMAGYTGFTAGLVNGRHTYIPFNRITERMNKVVITDRMWARLLSSTNQPSFLKPKDVHEVKKAEQPPAQLLEGGNCNGGAEEAKKVEQIPTQLLEEDNSKDKLK 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05490 506 MobiDBLite consensus disorder prediction 459 506 - -
Trre5g05490 506 FunFam ATP-dependent 6-phosphofructokinase 89 279 - -
Trre5g05490 506 PANTHER ATP-DEPENDENT 6-PHOSPHOFRUCTOKINASE 1 5 460 - -
Trre5g05490 506 Pfam Phosphofructokinase 96 401 IPR000023 GO:0003872|GO:0006096
Trre5g05490 506 MobiDBLite consensus disorder prediction 490 506 - -
Trre5g05490 506 SUPERFAMILY Phosphofructokinase 29 461 IPR035966 GO:0003872|GO:0006096
Trre5g05490 506 FunFam Phosphofructokinase 233 391 - -
Trre5g05490 506 PRINTS ATP-dependent phosphofructokinase family signature 232 250 IPR022953 GO:0003872|GO:0006002|GO:0006096
Trre5g05490 506 PRINTS ATP-dependent phosphofructokinase family signature 214 231 IPR022953 GO:0003872|GO:0006002|GO:0006096
Trre5g05490 506 PRINTS ATP-dependent phosphofructokinase family signature 181 197 IPR022953 GO:0003872|GO:0006002|GO:0006096
Trre5g05490 506 PRINTS ATP-dependent phosphofructokinase family signature 253 269 IPR022953 GO:0003872|GO:0006002|GO:0006096
Trre5g05490 506 PRINTS ATP-dependent phosphofructokinase family signature 310 322 IPR022953 GO:0003872|GO:0006002|GO:0006096
Trre5g05490 506 PRINTS ATP-dependent phosphofructokinase family signature 97 116 IPR022953 GO:0003872|GO:0006002|GO:0006096
Trre5g05490 506 Hamap ATP-dependent 6-phosphofructokinase [pfkA]. 24 454 IPR012004 GO:0003872|GO:0005524|GO:0006096
Trre5g05490 506 Gene3D - 90 279 - -
Trre5g05490 506 Coils Coil 237 257 - -
Trre5g05490 506 PIRSF ATP_PFK_TP0108 1 458 IPR012004 GO:0003872|GO:0005524|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05490 Trre-Chr5 55432912 55438111 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05490 K00850 - gmx:100818755 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05490 5 55432912 55438111 Trre5g05490 5 55432912 55438111 ECH