Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05480 ATGGTGATTTCCGATAGTCCCAACGGTGGTTCTACACCGCCACCACCGCCGCAACAAGAACAAGCCAACAAAGATAGATTCACAAAACCTATCTCTCTTGCTGGTCCTACCGACTCTGATCTCCATCGTAACACCGAATTAGAGAAGTTTTTGGTTGATTCCGGGCTTTATGAGAGCAATGAAGAAGCTGCAAGTAGACAAGAGGTTCTTCGCCGCCTCGATCAGATTGTGAAAAGCTGGGTGAAGCAGTTGACACGCCAACGAGGCTACACAGATCAGATGGTTGAGGATGCAAATGCCGTCATTTTCACTTTTGGCTCTTACCGACTAGGGGTTCACGGACCTGGAGTCGACATAGACACTTTGTGCATTGGTCCTTCCTATGTAAATCGAGAGCAAGACTTCTTCATCATTTTGCATAACATCCTGGCTGAAATGGAAGAAGTTACCGAACTTCACCCAGTTCCTGATGCACATGTCCCAGTAATGAAATTCAAGTTCCAGGGAATATCTATAGATTTGCTGTATGCAAGTATATCTATTTTGGTTGTGCCAGAAGATCTTGATATCTCAGATGGTTCCATTCTGTATGATGTTGATGAGCAAACTGTTCGAAGTCTAAATGGCTGTCGAGTGGCAGATCAGATTCTTAAACTTGTTCCAAATGTCGAGCACTTCCGAACTACGCTGAGATGTTTGAAGTTTTGGGCTAAAAGACGCGGTGTTTATTCAAATGTTACGGGATTCCTTGGAGGTGTAAATTGGGCTATTTTAGTTGCTCGAGTTTGCCAGCTTTACCCTAATGCAATTCCCAGTATGTTGGTTTCTAGATTCTTCAGGGTCTATTCACAATGGCGGTGGCCAAACCCTGTAATGCTATGCCCTATAGAAGAGAATGAACTGCAATTACCTATATGGGATCCTCGCAGAAACCATAGGGACAGGTATCACATTATGCCAATTATTACTCCTGCATACCCTTGCATGAATTCCAGCTACAATGTTTCGACAAGCACTCTTCGTGTTATGATGGAACAGTTCTGCCACGGCAACAAGATTTGTGACGAAATTGAGCTTAGCAAATCACAGTGGAGTGCACTTTTCCAGCCATATGTCTTTTTTGAGGCATATAAAAACTATTTACAAGTTGACATAGTTGCATTAGATGCTGATGATTTACTTTTGTGGAGAGGTTGGGTAGAGTCCCGACTGAGACAGCTAACCTTGAAGATAGAGCGAGATACCCATGGGATGCTGCAGTGTCATCCTTATCCACATGAGTATGCAGACACGTCCAAGCCTTGTGCACATTCTGCATTTTTCATGGGCTTGCAAAGAAAAGAGGGAGTAAGAGGTCAAGAAGGACAACAATTTGATATACGTGAAACGGTTGATGAGTTCAGACAAGAAATTGTTTCGTATGGTTACTGGAAGCCCGGGATGGAAATTTATGTTTCTCATGTTCGTCGAAAGCAGCTCCCTGCATTTGTTTTTCCAGATGGTTACAAACGCACTCGAATGCCGAGGCATATAAACCATGCAACTGAGAAAATGGGTGATGATACCAGAAAGTGCTACTCTGGATCCAGCTCTTCTGAAAGGTGCATCAAGAGGAAGAATAACTCTGAAATGGTGGATGTGAAGCCAGAGAAGCGGACATCTGTTAGCCCACAGAGGCTAGAGTGTGTTTCACCTGAAAGTTGTACTAGTAAATTGGGTGGTACACCTCAAATGAGTATGGAGTGTATTGAAGTGGTTAGGCGAGATGAATCAACAACGGAAGATGTCGACAGCAATTGTAAAATCAACTCATCTGATGGACTCTTAGGAAGTGGTGCAATTACTGAAGTAGGTGACATGCAGATAAACGGAACAGGTTTTGTAGGCTCCACACATGATAAGCTGAAATCAAAGGCTTTAGAAGTTCTGAATGAGAATGGAGTCAATGGGGATAAAGCTCGGGACCTGGCTTTTGTTTGCTTGGAAAGGGCAGAAACTACATCTACAAAAAGCTTGCCAAATTGGGAAGAGGGTGCTGTTGGAATGGATCAACAACTGGACAAAGCTTGTAATTTCACCAGGGCTGAATGTTCGGATTATGCACCAAGTGCCAGCACCCAGAACCTCAATTGCGAGATGTCAGACTCAGAAGTGTATAAATTGAAGATGGGACTAGGAGGATGA 2184 0.4359 MVISDSPNGGSTPPPPPQQEQANKDRFTKPISLAGPTDSDLHRNTELEKFLVDSGLYESNEEAASRQEVLRRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREQDFFIILHNILAEMEEVTELHPVPDAHVPVMKFKFQGISIDLLYASISILVVPEDLDISDGSILYDVDEQTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARVCQLYPNAIPSMLVSRFFRVYSQWRWPNPVMLCPIEENELQLPIWDPRRNHRDRYHIMPIITPAYPCMNSSYNVSTSTLRVMMEQFCHGNKICDEIELSKSQWSALFQPYVFFEAYKNYLQVDIVALDADDLLLWRGWVESRLRQLTLKIERDTHGMLQCHPYPHEYADTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRETVDEFRQEIVSYGYWKPGMEIYVSHVRRKQLPAFVFPDGYKRTRMPRHINHATEKMGDDTRKCYSGSSSSERCIKRKNNSEMVDVKPEKRTSVSPQRLECVSPESCTSKLGGTPQMSMECIEVVRRDESTTEDVDSNCKINSSDGLLGSGAITEVGDMQINGTGFVGSTHDKLKSKALEVLNENGVNGDKARDLAFVCLERAETTSTKSLPNWEEGAVGMDQQLDKACNFTRAECSDYAPSASTQNLNCEMSDSEVYKLKMGLGG 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05480 727 Gene3D Poly(A) polymerase predicted RNA binding domain 372 488 - -
Trre5g05480 727 SUPERFAMILY Nucleotidyltransferase 26 219 IPR043519 -
Trre5g05480 727 Pfam Nucleotidyltransferase domain 99 175 IPR002934 GO:0016779
Trre5g05480 727 MobiDBLite consensus disorder prediction 1 41 - -
Trre5g05480 727 SUPERFAMILY PAP/OAS1 substrate-binding domain 221 370 - -
Trre5g05480 727 PANTHER POLY A POLYMERASE 14 539 - -
Trre5g05480 727 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 373 498 IPR011068 GO:0003723|GO:0016779|GO:0031123
Trre5g05480 727 Pfam Poly(A) polymerase predicted RNA binding domain 435 505 IPR007010 GO:0003723|GO:0043631
Trre5g05480 727 Pfam Poly(A) polymerase predicted RNA binding domain 373 432 IPR007010 GO:0003723|GO:0043631
Trre5g05480 727 Pfam Poly(A) polymerase central domain 28 369 IPR007012 GO:0043631|GO:1990817
Trre5g05480 727 FunFam Poly(A) polymerase alpha, putative 58 214 - -
Trre5g05480 727 FunFam Nuclear poly(A) polymerase 4 372 488 - -
Trre5g05480 727 CDD NT_PAP_TUTase 66 220 - -
Trre5g05480 727 FunFam Putative poly(A) polymerase gamma 198 368 - -
Trre5g05480 727 Gene3D - 28 368 - -
Trre5g05480 727 Gene3D Beta Polymerase, domain 2 58 214 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05480 Trre-Chr5 55396904 55402763 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05480 K14376 - gmx:100802620 1207.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05480 5 55396904 55402763 Trre5g05480 5 55396904 55402763 ECH