Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05474 ATGGGTGTTGTTTCTCATTACGCGGTTCCGTCATGCCTCGTCCCATCGCTGTCATGTGCAGCTTCAACTCTCCTTCGTTCTCGCCGCCTCAGACCAACCTTCCGATGCTGTTCCACTCTATCTTCAACCTCTCCACAGACTCCAACTCCATCCCCAACCTCTATCAAGAAACGAGTTGCCTCAGGAGTTCAACCTACTGGTTCAATTCACCTTGGAAATTACTTTGGCGCCATCAAAAATTGGGTTGCCCTTCAGAATGAGTATGATACACTTTACTTCATTGTGGATCTGCATGCGATTACATTACCTCATGACGCACAACAATTATCTAGGGATACAAAGTCAACTGCAGCCATTTACCTTGCATGTGGGATAGATCCTTCAAAGGCTTCAGTTTTTGTTCAGTCTCATGTCCGTGCACATGTAGAATTGATGTGGCTGCTAAGTTCCATAACACCAATTGGCTGGCTGAACAAAATGATACAGTTTAAAGAGAAATCTCGCAAGGCGGGAGATGATGAAGTTGGGGTTGCTCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATTCTTCTATATCAGACCGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCATTTGGAGTTGACCCGTGACTTAGCTGAACGGGTTAATAATTTATATGGAGGAAGAAAGTGGAAAAAATTAGGCGGGCGAGGTGGTTCTATATTTAAGGTTCCAGAGCCCCTTATACCTCCAACTGGAGCTCGAATTATGTCCCTAACTGATGGCACTTCTAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATTCTAAAGATCTTATAGCAAACAAGATCAAACGCTGCAAAACTGATTCATTTCCAAGCTTGGAATTCGGCAATCCTGAGAGGCCTGAATGTAATAATCTTCTTTCCATATACGAGCTTGCTTCTGGAAAGACCAAAGAGGAAGTTGTGAAGGAATGCCAAAACATGAATTGGGGCACATTCAAACCTCTTTTAACAGATGCCTTGATTGACCATTTGCAACCCATTCAGGGTCGATATGAGGAACTCATGTCGGATTCAGGTTATTTAGACAAAGTATTAGAAGATGGTGCTAGAAAAGCAGCAGAAATAGCGGATGCTACAGTTCATAATGTGTATCAAGCCATGGGATTTTCGAGGAGACAGTGA 1197 0.4294 MGVVSHYAVPSCLVPSLSCAASTLLRSRRLRPTFRCCSTLSSTSPQTPTPSPTSIKKRVASGVQPTGSIHLGNYFGAIKNWVALQNEYDTLYFIVDLHAITLPHDAQQLSRDTKSTAAIYLACGIDPSKASVFVQSHVRAHVELMWLLSSITPIGWLNKMIQFKEKSRKAGDDEVGVALLTYPVLMASDILLYQTDFVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGRGGSIFKVPEPLIPPTGARIMSLTDGTSKMSKSAPSDQSRINILDSKDLIANKIKRCKTDSFPSLEFGNPERPECNNLLSIYELASGKTKEEVVKECQNMNWGTFKPLLTDALIDHLQPIQGRYEELMSDSGYLDKVLEDGARKAAEIADATVHNVYQAMGFSRRQ 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05474 398 SUPERFAMILY Nucleotidylyl transferase 58 394 - -
Trre5g05474 398 Gene3D HUPs 59 393 IPR014729 -
Trre5g05474 398 FunFam Tryptophan--tRNA ligase 252 362 - -
Trre5g05474 398 Gene3D - 254 364 - -
Trre5g05474 398 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 34 394 - -
Trre5g05474 398 Pfam tRNA synthetases class I (W and Y) 58 350 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Trre5g05474 398 NCBIfam tryptophan--tRNA ligase 56 394 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Trre5g05474 398 CDD TrpRS_core 58 346 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Trre5g05474 398 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 65 74 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Trre5g05474 398 PRINTS Tryptophanyl-tRNA synthetase signature 261 271 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Trre5g05474 398 PRINTS Tryptophanyl-tRNA synthetase signature 69 85 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Trre5g05474 398 PRINTS Tryptophanyl-tRNA synthetase signature 119 138 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Trre5g05474 398 PRINTS Tryptophanyl-tRNA synthetase signature 196 217 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Trre5g05474 398 Hamap Tryptophan--tRNA ligase [trpS]. 56 395 IPR024109 GO:0004830
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05474 Trre-Chr5 55355978 55364224 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05474 K01867 - gmx:100780314 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05474 5 55355978 55364224 Trre5g05474 5 55355978 55364224 ECH