Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05472 ATGGATTACGACAGCACGGATGATGAGATTGAAGTTGAAGAGGATATCCCCGAAGCAGAAGAATTACAGATCAATCAGTTCCTCTACGAGTTAGAAGAAGATGATCAACAATTCGATCACCCTCTCATCCACTTTTCATCTCCATCTTCTTCTTCCTCTTCCCAAGACCAACCTAGTAATAATGGCATTGTAATTGGTTCATCAGATGAGTTCACTTTCAATACCAGTATCGCTTCTTTGCACACATATCTTGGCGATGTTGAAGACACGCGCCACAGGACTGCTTTTTTGGATGCTGGTGCTATATTCAATCTTCCACTCTTTTGTCTCCAAGGAGTTGTACTCTTTCCCGGGGCTACTCTTCCCCTTAGGGTTACTGTTTCCCGTTTTGTGACTGCTATTGAGAGAGCTTTGAGTCAAGTTGATGTTCCTTACACCATTGCTGTGATTCGGGTTCACAGGGAAACCGGAAGTTTTACGATGAAAGCGGCAAGCATTGGGACAACTGCTGTGATTCGACAATATGGGCGTCTAGAGGATGGTTCACTGAATGTGGTTACCCGTGGACAACAACGATTTCACCTAAGGCGGTGTTGGAATGACGTGGACGGAGTGCCATATGGAGAGATCCAAATTATCGAGGAAGATCTACCATTGAGAACTCCAAGGGATGCTTTTGGAAAATCAACATCATCAAGTAATATGCTTTGCAGCCGTGTTAAAGTGCATGCCTTAAATGGGGAAAATGATTCAGAAGCAAATTCAAATGAGGGTTTCAAGAGTAAGTTTTCATCAATTGAAGGGAAAACACATCTATCAGTCATTGGTTGCAGTTCTGCGTCTGATACAATCGATGTATCAACAAACAACAGTGATGTTAACTTTATGCATAAATCAGATCAGGAAATAAGATCCAATTTGAATTTGAGCATTGAGAACTGTTCCACTTCTGGAAAGCAGTCATCCAAAGAAGAGCTTAATAGATGCTTAAAGAATATATCATCACATACAATTTCAAATGCATTCTTGCCCCACTGGGTATATCGTATGTATGACTCCTATTGGCTTGCACAAAGGGCTGCAGATATGTGGAAGCAAATAGTTGGGATGCCTAGTATGGATAGTCTCATCAAGAAGCCTGATGTTTTATCGTTTCATATTGCTAGTAAAATACCTGTTTCTGAGTCTACAAGGCAACAACTATTGGATATCGACGGCATCGTGTATAGGTTGCGTAGGGAAATCGAATTACTTGATAGTATTGATCTTATCCGATGTAGAACATGCCAAACTACAATTGCAAAACGAAGTGATATGTTGGTGATGTCGGATGAGGGTCCTCTTGGTGCCTATGTAAATCCTGGTGGTTATGTACATGAGATAATGACTCTTTACAAAGCCAATGGCTTATCTCTTGTTGGGCACGCAGTTACAGAATACAGCTGGTTTCCTGGATATGCATGGACAATTGCAAATTGTGCGACATGTAGAACCCAAATGGGATGGCTTTTTACAACCACCAACAAAAAACTGAAGCCTGATTCATTTTGGGGTATTCGGAGCTGTCAAGTTGCAGAAGAAATACACCGAAACCTTTAG 1599 0.414 MDYDSTDDEIEVEEDIPEAEELQINQFLYELEEDDQQFDHPLIHFSSPSSSSSSQDQPSNNGIVIGSSDEFTFNTSIASLHTYLGDVEDTRHRTAFLDAGAIFNLPLFCLQGVVLFPGATLPLRVTVSRFVTAIERALSQVDVPYTIAVIRVHRETGSFTMKAASIGTTAVIRQYGRLEDGSLNVVTRGQQRFHLRRCWNDVDGVPYGEIQIIEEDLPLRTPRDAFGKSTSSSNMLCSRVKVHALNGENDSEANSNEGFKSKFSSIEGKTHLSVIGCSSASDTIDVSTNNSDVNFMHKSDQEIRSNLNLSIENCSTSGKQSSKEELNRCLKNISSHTISNAFLPHWVYRMYDSYWLAQRAADMWKQIVGMPSMDSLIKKPDVLSFHIASKIPVSESTRQQLLDIDGIVYRLRREIELLDSIDLIRCRTCQTTIAKRSDMLVMSDEGPLGAYVNPGGYVHEIMTLYKANGLSLVGHAVTEYSWFPGYAWTIANCATCRTQMGWLFTTTNKKLKPDSFWGIRSCQVAEEIHRNL 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05472 532 Pfam ATP-dependent protease La (LON) substrate-binding domain 104 419 IPR003111 -
Trre5g05472 532 Gene3D - 85 213 IPR046336 -
Trre5g05472 532 FunFam Blast:Protein cereblon homolog 417 532 - -
Trre5g05472 532 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 424 513 IPR004910 -
Trre5g05472 532 MobiDBLite consensus disorder prediction 42 61 - -
Trre5g05472 532 Gene3D - 352 417 - -
Trre5g05472 532 SMART lon_5 104 420 IPR003111 -
Trre5g05472 532 CDD CRBN_C_like 424 520 IPR034750 -
Trre5g05472 532 SUPERFAMILY PUA domain-like 104 419 IPR015947 -
Trre5g05472 532 FunFam Lon protease homolog 352 416 - -
Trre5g05472 532 Gene3D Peptide methionine sulfoxide reductase. 418 531 - -
Trre5g05472 532 PANTHER CEREBLON 56 522 - -
Trre5g05472 532 ProSiteProfiles CULT domain profile. 421 528 IPR034750 -
Trre5g05472 532 ProSiteProfiles Lon N-terminal domain profile. 105 420 IPR003111 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05472 Trre-Chr5 55348503 55352063 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05472 K11793 - gmx:100779918 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05472 5 55348503 55352063 Trre5g05472 5 55348503 55352063 ECH