Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05466 ATGGATCGCTTGCGTCCTCGTAACAGACCCGTTTTCTCCGGATTCACAAATTCTGAGATTGTGAAAATGGAGAAATTAATAAGAGAATCAAAAGGACAATCATTCACTCAGGATTTTTATCAGAAATTAGCTAAAAGTTTCAACTGTTCATCTGGTCGTGCCGGGAAACCTGTCATCAAATGGACTGAGATACAGAGTTGGTTTCAGACTAAGCTCCAAGACTCACCACAAGTACCTGAAAATGAATTGGTTTCTCCTCAAGGCCCTCAATGTAAGGAAGGAGAAACTGACCAAGACCCTTCAGAGTTTGAATTCGAAGCTAGGTCTTCAAAAGACGGGGCATGGTACGATGTTGAGACATTTCTTGCTCACAGATTTGTTAGCACAGGGGAAGCTGAAGTCAGAGTCAGATTTGTTGGGTTTGGGGCAGAAGAAGACGAGTGGGTCAACATAAAAAATTCAGTCCGAGAACGCTCAGTTCCGTTTGAAAACACAGAGTGTTCCAACCTGAAAATTGGAGACCCTGTCTTGTGCTTTCAGGAAAGGAGAGATCAAGCAATTTATTATGACTCTCACATTGTAGAGATCCAAAGGAGAATGCATGATATCCGAGGTTGCAGGTGTCACATCTTAATTCGGTACGATCACGACAACAGTGAGGAAAGAGTTCGCTTGAGGAGACTGTGCCACAGACCAAGATGA 702 0.4316 MDRLRPRNRPVFSGFTNSEIVKMEKLIRESKGQSFTQDFYQKLAKSFNCSSGRAGKPVIKWTEIQSWFQTKLQDSPQVPENELVSPQGPQCKEGETDQDPSEFEFEARSSKDGAWYDVETFLAHRFVSTGEAEVRVRFVGFGAEEDEWVNIKNSVRERSVPFENTECSNLKIGDPVLCFQERRDQAIYYDSHIVEIQRRMHDIRGCRCHILIRYDHDNSEERVRLRRLCHRPR 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05466 233 SUPERFAMILY Chromo domain-like 112 154 IPR016197 -
Trre5g05466 233 Gene3D - 162 233 - -
Trre5g05466 233 MobiDBLite consensus disorder prediction 74 99 - -
Trre5g05466 233 Gene3D - 100 161 - -
Trre5g05466 233 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 11 232 IPR039276 -
Trre5g05466 233 Pfam SAWADEE domain 102 229 IPR032001 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05466 Trre-Chr5 55305003 55307631 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05466 - - gmx:100801021 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05466 5 55305003 55307631 Trre5g05466 5 55305003 55307631 ECH