Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05460 ATGGAGCCACTAACGTCGGGAGCCAGCAACCGTATAATTCCTCTTCTAAAAGCATTCAGAGCCTCTCTCTTATTCGTCTACACTTTTTTTCTTTCATTTCTATTGTTCATTCTTCCTCGCCGGAATCGAACGATTCCACCTTCGTCTCCGAAGAAGCATTTGAAGAGACGATGGTTGGTTAAGGAAGAAGAGGATACGTTTAGGAGAAGATTGTTAGCGCAAGATGTTGGAATGGGTCATGATGACGGTTGTTGCCGGTGGAATACTTCTATTTTCTATGGTGTTAGAAATAATGCTTTGTTTTGTCGCTCTTGGTTTCCAGTTTTCGGTGATCTTAAGGGCATTCTGATCATCATTCACGGGCTTAATGAACACGGCGGAAGATATGCAGATTTTGCTAGGCAGTTAACGTTGTGCAACTTTGGTGTCTATGCGATGGACTGGATAGGTCATGGAGGTAGTGATGGATTACATGGTTATGTTCCTTCTCTTGATCATGTGGTTGCAGACACAGGAGCTTTCTTGGAAAAGATTAAATCAGAGAATCCTGGAATACCTTGCTTTCTCTTTGGTCACTCCACTGGAGGTGCTGTAGTTTTGAAAGCGGCATCGCATCCTCATATTGAAGTGATGGTGGAAGGAATCATATTAACCTCGCCAGCTTTGCGTGTGAAGCCATCTCACCCAATTGTTGGTGCTGTTGCTCCAATATTTTCTCTGGTAGCACCAAGGTTCCAATTCAAAGGAGCAAACAAAAGGGGAATTCCAGTTTCAAGGGATCCAGCTGCCTTATTGGCAAAGTACTCCGATCCTCTAGTCTACACTGGACCTATCAGAGTCCGAACTGGTCACGAAATATTGCGAATTTCGTCCTACTTGATGCGAAACTTCAAGTCTGTGACAGTACCATTCTTTGTCCTGCACGGAACTGCTGACAAAGTAACTGATCCATTGGCATCACAAGATTTATACAATAAGGCAGCTTCTGAGTTCAAAGACATAAAGCTTTATGATGGCTTCTTGCACGACCTTCTGTTTGAGCCTGAACACGAAGAGATAGCTCGGGACATTATCAACTGGATGGAAAAGAGATTATTTAGTACTATTTGA 1110 0.4315 MEPLTSGASNRIIPLLKAFRASLLFVYTFFLSFLLFILPRRNRTIPPSSPKKHLKRRWLVKEEEDTFRRRLLAQDVGMGHDDGCCRWNTSIFYGVRNNALFCRSWFPVFGDLKGILIIIHGLNEHGGRYADFARQLTLCNFGVYAMDWIGHGGSDGLHGYVPSLDHVVADTGAFLEKIKSENPGIPCFLFGHSTGGAVVLKAASHPHIEVMVEGIILTSPALRVKPSHPIVGAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLMRNFKSVTVPFFVLHGTADKVTDPLASQDLYNKAASEFKDIKLYDGFLHDLLFEPEHEEIARDIINWMEKRLFSTI 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05460 369 SUPERFAMILY alpha/beta-Hydrolases 99 365 IPR029058 -
Trre5g05460 369 FunFam Monoglyceride lipase 86 365 - -
Trre5g05460 369 PANTHER PHOSPHOLIPASE-RELATED 96 364 - -
Trre5g05460 369 Pfam Serine aminopeptidase, S33 112 349 IPR022742 -
Trre5g05460 369 Gene3D alpha/beta hydrolase 88 366 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05460 Trre-Chr5 55260184 55263566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05460 1 285 Acyl Lipid Metabolism Gene Families AT5G11650 69.492 2.82e-131 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05460 - - gmx:100779245 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05460 5 55260184 55263566 Trre5g05460 5 55260184 55263566 ECH