Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05448 ATGGCTGCTCAACTGTTCAGAGACCTATCATTAGGCCATTCCAAGAGAGAATCAACATCAACACCATCACCGCCATTAAAGATAATGCCACCTAGAAAACCACCTACAATCGCCGACGATCTTCCTTCACCGCTCGGTCAACTTTCAATCAACCTTTCCGATTCACAGCTCACCTTAACCGCTTACGAGATCTTCGTTGCCGCTTGTCGTACATCTTCCGGTAAGCCTTTAAGTTCTTCTGTTGCTAACTCATCTTCCAACAACAACAGCCATTCTGACTCACCGAGTCTTAACTCGCTTGCTATTCAACGATCCCTAACTTCTACCGCCGCCAGTAAGGTTAAGAAGGCTTTCGGTTTGAAATCTCCCGGTTCGGGTTCTAAGAAAAGTCCTGGTTCTGGTCCCGGTTCCGGTTCGGGTCAAGGTAAATCGAAACGCCCGTTAACGGTTGGTGAACTTATGAGGAATCACATGAGGGTTTCTGAAGCTATGGATTCGCGTGTCAGACGTGCTTTGCTCAGAATTTCTGCTGGACAGGTTGGAAGAAGGATTGAGTCGGTGGTGGTTCCACTTGAGCTAATGCAGCAACTCAAAGCTTCGGATTTTACCGATCATCAAGAGTACGATGAATGGCAGAAGAGGACTCTCAAGGTTCTGGAGGCTGGTTTAATTTTGCATCCTTACATACCTTTGGAAAAATCCAACTCTGCTGCGCAGCGGTTGCGGCAGATTATTCACGCAGCTTTGGATAGGCCTATTGATACCGGGAAGAATAATGAGTCTATGCAGGTTCTTCGTAGTGCTGTCATGTCTCTCGCAAATAGGTCGTATGATGGATCTCTTACTGATTCATGTCATTGGGCAGATGGGATTCCTCTGAATCTTAGGATTTATGAAATGCTTCTACAGTCCTGCTTTGATGTTAATGATGAATCGTCAATTATTGATGATTTTGATGAGCTAATGGAACAAATTAAGAAGACATGGGGAATACTTGGATTGAACCAGACGTATCATAATCTCTGTTTTACTTGGGTTTTATTTCATCGATTTGTTGCTACTGGCCAGATGGATTTGGAGCTTCTGTCTTATGCTGATGGCCAGCTTGCTGAAGTTGCAAAAGATGCAAAGACAACAAAAGATTCTGAGTATTCCAAAATTTTGAGTTCTACATTGACTTCAATAATGGGATGGGCAGAGAAAAGGCTTCTTGCATATCATGAAACTTTTGATCGTGGAAACGTTGAAACTATGGAGGGAATTGTCTCTTTAGGGGTAGCAGCGGCTAAGGTATTGGTTGAAGATATATCTAATGAGTATCGTCGGAGGAGAAGAACTGAAGTAAATGTGGCTCGGGAAAGAATCGAAACATACATCAGGTCATCTCTACGTACGGCCTTTGCCCAGATAATGGAGAAAGCAGACTTAAGCAGGAGGGCATCAAGAAACCAGCCAAATGCTCTCCCTCTCCTTGCAATTCTTGCAAAGGATGTAGGCACCCTGGCAATTAACGAAAAGCTAATATTCAGTCCAATATTCAAGAGATGGCATCCTTTGGCAGCAGGTCTTGCTGTGGCCACCCTTCATGCATGCTATGGAAACGAATTGAAGCAGTTCATTTCAGGTATCACAGAGCTGAGCCCTGATGCTGTTCAAGTGTTAAGAGCTGCAGATCAGTTGGAGAAAGACCTTGTGCAGATAGCAGTTGAGGATTCAGTAGACAGTGATGACGGCGGAAAAGCAATAATCCGTGAGATGCCTCCTTATGAGGCTGAAGGTGCAATTGCCAATCTTGTGAAAATATGGATTAAGACTAGAATAGATAGACTAAAAGACTGGGTTGATAGGAATCTTCAGCAAGAGCTTTGGAGTCCACAAGCAAACCAGGAAGGATACGCTCCATCTTCTGTTGAAGTTCTGCGACTCATAAATGAAACTCTGGATGCATTCTTTGAGCTTCCAATCCCAATGCATCCTGCATTGCTTCCTGAAGTGATGCACGGCCTCGATAGATGCCTTCAGTATTATGTTACCAAATCCAAATCTGGCTGTGGATCACGAAATTCATTTATTCCAACAATGCCAGCACTGACCAGATGCACTATTGGCTCAAAGTTTCAAGGCTTTGGGAAAAAAAAAGACAAATCTCCAAATTCTCAGAAGAGAAATTCTCAGGTTGCAACAAATGGGGATAGCTCTTTTGGGATACCACAGCTCTGTGTTCGCATAAATACTTTGCAGTGGATCCTAGGTGAATTTGATGTTCTGGAAAAAAGAATAATTACTCTTTTGCGGAACTCAGAATCTGCTCGTGAAGAAGATTTTTCAAATGGATTAGCAAGTAAGTTTGAACTATCTCCAGCTGCGTGTCTTGAAGGAATTCAACAACTCTGTGAAGCTGCGGCATATAGAATTGTCTTCCATGATCTAAGCCATGTTTTATGGGATAGTTTGTATGTTGGAGATCCATCATCTTCCAGGATCGATCCGTTTCTTCAGGAACTTGAGCGGAACTTAATGTTCATTTCAGACAGTGTTCATGAAAAAATCCGCACACGTATTATTACTGAAATAATGAGAGCTTCCTTCGATGGGTTCTTGCTTGTATTGCTTGCTGGAGGTCCCTCTCGTGCTTTTTCCCGGAAGGACTCACAGATCATAGAGGATGATTTCAAATTTCTAAAGGAGCTGTTTTGGGCGAATGGAGACGGCTTACCTTCTGAAATAATAGACAAGTTTGCAACTACCCTGAGGTCTATCCTTCCCCTTTTCAGGACAGACACAGAGACCCTCATTGAGCAGTTTAGACGGATAACACTTGAGACATATAAATCTTCCGCCCGGTCTAGAATTCCATTACCTCCAACTTCTGGTCAGTGGAATCCATCTGAACCAAATACATTATTACGTGTTTTATGCTATAGAAATGATGAATCAGCTTCTAGGTTTCTTAAAAAGACATATGATCTCCCTAAGAAACTTTAA 2985 0.4285 MAAQLFRDLSLGHSKRESTSTPSPPLKIMPPRKPPTIADDLPSPLGQLSINLSDSQLTLTAYEIFVAACRTSSGKPLSSSVANSSSNNNSHSDSPSLNSLAIQRSLTSTAASKVKKAFGLKSPGSGSKKSPGSGPGSGSGQGKSKRPLTVGELMRNHMRVSEAMDSRVRRALLRISAGQVGRRIESVVVPLELMQQLKASDFTDHQEYDEWQKRTLKVLEAGLILHPYIPLEKSNSAAQRLRQIIHAALDRPIDTGKNNESMQVLRSAVMSLANRSYDGSLTDSCHWADGIPLNLRIYEMLLQSCFDVNDESSIIDDFDELMEQIKKTWGILGLNQTYHNLCFTWVLFHRFVATGQMDLELLSYADGQLAEVAKDAKTTKDSEYSKILSSTLTSIMGWAEKRLLAYHETFDRGNVETMEGIVSLGVAAAKVLVEDISNEYRRRRRTEVNVARERIETYIRSSLRTAFAQIMEKADLSRRASRNQPNALPLLAILAKDVGTLAINEKLIFSPIFKRWHPLAAGLAVATLHACYGNELKQFISGITELSPDAVQVLRAADQLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEGAIANLVKIWIKTRIDRLKDWVDRNLQQELWSPQANQEGYAPSSVEVLRLINETLDAFFELPIPMHPALLPEVMHGLDRCLQYYVTKSKSGCGSRNSFIPTMPALTRCTIGSKFQGFGKKKDKSPNSQKRNSQVATNGDSSFGIPQLCVRINTLQWILGEFDVLEKRIITLLRNSESAREEDFSNGLASKFELSPAACLEGIQQLCEAAAYRIVFHDLSHVLWDSLYVGDPSSSRIDPFLQELERNLMFISDSVHEKIRTRIITEIMRASFDGFLLVLLAGGPSRAFSRKDSQIIEDDFKFLKELFWANGDGLPSEIIDKFATTLRSILPLFRTDTETLIEQFRRITLETYKSSARSRIPLPPTSGQWNPSEPNTLLRVLCYRNDESASRFLKKTYDLPKKL 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05448 994 ProSiteProfiles Munc13-homology domain 1 (MHD1) profile. 551 694 IPR014770 -
Trre5g05448 994 MobiDBLite consensus disorder prediction 7 42 - -
Trre5g05448 994 ProSiteProfiles Munc13-homology domain 2 (MHD2) profile. 825 935 IPR014772 -
Trre5g05448 994 Coils Coil 753 773 - -
Trre5g05448 994 MobiDBLite consensus disorder prediction 76 97 - -
Trre5g05448 994 MobiDBLite consensus disorder prediction 117 148 - -
Trre5g05448 994 MobiDBLite consensus disorder prediction 24 38 - -
Trre5g05448 994 MobiDBLite consensus disorder prediction 126 144 - -
Trre5g05448 994 PANTHER PROTEIN UNC-13 HOMOLOG 29 992 IPR008528 -
Trre5g05448 994 MobiDBLite consensus disorder prediction 708 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05448 Trre-Chr5 55163912 55168416 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05448 - - gmx:100814675 1682.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05448 5 55163912 55168416 Trre5g05448 5 55163912 55168416 ECH