Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05446 ATGGCTTTCACAGCCTCACCATCCATATTAAGAAACTCCATTTCATGGAAAAATATGATTGTTTGTGATATGGCTGATAACACTTGTAGAGACAAGTTTTCATTTCCAAACAAGGGCATCTATAAAGCCCAACGCAATCTTCGAGATCAATTATCCGTTGCAAATGTTGTGAGTCCATCGCGTGTGATTGCCCCACCTCCACCACCGGAGAAACGTTCAGGGACCACCGATGGTCACCAACACCATGTTGCATGGACTAGTGTCCCCCAAGAGAGATGGGAAGGAGAACTGCTTGTTCAAGGACATATTCCACTCTGGTTGAAAGGAACGTATATAAGGAATGGTCCGGGCATGTGGAACATAGGGGACTATAACTTCAGGCATCTCTTTGACGGGTATGCCACCTTGGTAGGACTTCACTTCGAGAATGGACGGTTAACCGCGGGTCACCGGCAAATTGAATCGGAAGCCTATCAAGCAGCAAGGAAAAATCAGAAGATATGTTATCGTGAATTTTCTGAAGTGCCTAAGGCTGAAAATTTTTTGGCCTACGTAGGGGAACTAGCAAGCCTTTTCTCCGGTGCGTCGCTTACCGACAATGCCAACACTGGCGTGGTGAAGCTCGGTGATGGTAGGGTAGTTTGTTTGACGGAGACACAAAAAGGGTCCATAGTGATAGACCCTGACACATTGGAGACAATTGGGAAATTTGAGTACAGTGATTCTTTGGGCGGTCTCATTCACTCTGCACACCCCATTGTGACGGATAAGGAATTTATAACATTAATCCCCGACCTTTTGAAACCAGGATACTTGGTGGTAAAGATGGAACATGGCTCCAATGAGAGGAATGTTATTGGGCGAGTTGATTGTCGGGGCGGATCATCGCCCGGTTGGGTTCACTCCTTCCCTGTCACTCAACACTATGTCATTGTGCCTGAAATGCCGTTGAGGTATAGTGCTCAGAATTTGCTCAGGGCTGAACCAACTCCTTTATACAAATTTCAGTGGCATCCTGAGTCCAAAGCTTTTATGCATGTTATGTGCAAGACTAGTGGAAAGATTGTGGCAAGTGTGGAAGTGCCTTTGTTTGTTACTTTCCATTTCATAAATGCATATGAAGAGGAAGATGAAGATGGGAGGGTGACTGCTGTCATTGCTGACTGCTGTGAGCACAATTCAAACACTGACATTCTTGAAAAGCTTAAATTACAAAACCTTCGCTCATTTAATGGCAAAGATGTTCTACCAGATGCGAAGGTTGGTCGGTTTAGAATACCACTAGATGGAAGTCCATGTGGAACATTAGAAGCAGCACTAGACCCAAATGAACATGGGAGAGGCATGGATATGTGCAGCATAAACCCTAATTATTTAGGGATGAAATACAGATATGCATATGCTTGTGGAGCACAACGCCCTTGTAACTTCCCCAACACTCTCACCAAGATTGATTTAGAAATGAAAAGGGCTAAGAACTGGCATGAAGAAGGTGTTGTGCCCTCAGAACCATTATTTGTACCTCGACCAGGAGCAACAGAGGAAGATGATGGTGTGGTAATCTCCATAATCAGTGAGAAAAATGGAGAAGGATATGCGTTGGTGTTAGATGGTTCCACTTTTGAAGAGGTTGCTAGGGCTAAGTTCCCTTATGGACTTCCATATGGGTTGCATGGATGCTGGGTTCCAAAACAGTAA 1698 0.4464 MAFTASPSILRNSISWKNMIVCDMADNTCRDKFSFPNKGIYKAQRNLRDQLSVANVVSPSRVIAPPPPPEKRSGTTDGHQHHVAWTSVPQERWEGELLVQGHIPLWLKGTYIRNGPGMWNIGDYNFRHLFDGYATLVGLHFENGRLTAGHRQIESEAYQAARKNQKICYREFSEVPKAENFLAYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIVIDPDTLETIGKFEYSDSLGGLIHSAHPIVTDKEFITLIPDLLKPGYLVVKMEHGSNERNVIGRVDCRGGSSPGWVHSFPVTQHYVIVPEMPLRYSAQNLLRAEPTPLYKFQWHPESKAFMHVMCKTSGKIVASVEVPLFVTFHFINAYEEEDEDGRVTAVIADCCEHNSNTDILEKLKLQNLRSFNGKDVLPDAKVGRFRIPLDGSPCGTLEAALDPNEHGRGMDMCSINPNYLGMKYRYAYACGAQRPCNFPNTLTKIDLEMKRAKNWHEEGVVPSEPLFVPRPGATEEDDGVVISIISEKNGEGYALVLDGSTFEEVARAKFPYGLPYGLHGCWVPKQ 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05446 565 PANTHER BETA-CAROTENE DIOXYGENASE 86 563 IPR004294 GO:0016702
Trre5g05446 565 MobiDBLite consensus disorder prediction 60 82 - -
Trre5g05446 565 Pfam Retinal pigment epithelial membrane protein 90 563 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05446 Trre-Chr5 55149664 55153597 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05446 K17913 - gmx:100814148 961.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05446 5 55149664 55153597 Trre5g05446 5 55149664 55153597 ECH