Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05435 ATGGCCATTTCATGTAATAATAATGCATTTAAAGTTAATTGTTGCATCCAGAAAAGACCTTCCTATGTCTCAGACAATTCTCATCACCACAATAATACTCCACTCTTCTCTATTGTTAAGCCAAACAAGAAATCAAGTCTACCTGAAGTTTCCTTACAAATTGATGTTCCAAAAACAATGAAAAATGCTGTGGCTAAATTAATTGACGTTTTCGTTGATTCATTCTTTGAATTCATTGACAAACCTTTGCTTCCATCTAAGAGTAACTTTGCTCCTGTGGAAGAGTTGGGGGAAGCCATACTTGTAACTTGCATCCAAGGACGAATTCCTAGTGATTTTCCGGAGGGTGTTTACATTAGAAATGGACCAAATCCACTTTTTGGAGGACTGAAATCAACAAATTCAATATTTGGTAAGTCAAGTCATATTTGGGTTGAAGGAGAAGGAATGCTTCATGCATTATATTTTCAAAAATCAATTAATGGAAGCTGGAAAATCCACTACAACAATAAGTACGTTGAAACTGAAACATACAACATTGAAAAACAAAGAAACAAACCATTGTTTCTGCCTGCCATAGAAGGCAATTCAATGGCCATTTTGTCTGCTTATCTCTTCAACTGGTTGAGATCTGGCAAAGCAAACAAATACATTAGCAACACCAATGTGTTTGAGCATTCAGGGAAATTTTACTCAATTGCTGAAAGTCACATGCCACAAGAGATTGATATTTTGTCCTTGAAAACTTTAAAAAATTGGGACCTCAATGCAGATTGGAATAGACCTTTTACAAGCCATCCAAAGAAAGCTCCAATTACTGGGGAGCTAGTTACATTAGGTGTGGAACCAATTAAACCTTTTGCTGTGGTTGGAATTATTTCTGCTGATGGAAAAAAGTTGGTTCATAAAGTTGATATAAAACTAAATAGGTGTAGTCTTTGCCATGACATAGGTGTTACACAAAGGTACAATGTGATAATGGATTTTCCACTAACCATTGATCTAAACAGACTTCTAAGAGGAGGCCAATTAATAAAGTATGACAAAAATGATTATGCAAGGATTGGGGTAATGCCACGCTATGGTGATGCTAACTCGGTCAAATGGTTTGAGGTTGAACCTAATTGCACCTTTCACATTATCAATTCTTTTGAAGATGGAAATGAGATTGTGGTGAGGGGCTGCAGATCTCTAGACTCTTTAATTCATGAACCCGACCCGAGTTCGAAAGAATTTGACTGGTTATCTCGTTGTTACGAATGGCGATTGAATATGCAAACCGGAGAAGTTAAGGAGAAAGATTCTTGTGGTAACAAAGTAGTTTATATGGATTTTCCTATGATCAATGAAAAATATGTTGGTATTAAGCATAAATATGCATACACACAAATAGTTGATCCTATTGCAAGCTCTACCACTCAAGATGTGCCAAAATATGGAGGCTTAGCTAAACTATACTTTGAAGAATCATGTGAAGGATTATCTATGTCAAAGAGAGAAAAAGATGAAGCTATAAGGATGGAATACCATATGTTTGAGAAGAATACATTTTGCAATGGTGCTGCTTTTGTTGCTAGAGATGAAGGTGTTGAAGAAGACGATGGTTGGATCGTTACTTTTGTTCACAATGAAGATACTAACACATCTCAAGTTCATATAATCGACACAAAGGATTTTTGTGGTGGGACGGTTGCCAAAATCGAAATGCCTTGCAGAGTTCCATATGGATTTCATGGAGCTTTCATGCCAATCTCATTCCAAGATCAATAG 1770 0.3633 MAISCNNNAFKVNCCIQKRPSYVSDNSHHHNNTPLFSIVKPNKKSSLPEVSLQIDVPKTMKNAVAKLIDVFVDSFFEFIDKPLLPSKSNFAPVEELGEAILVTCIQGRIPSDFPEGVYIRNGPNPLFGGLKSTNSIFGKSSHIWVEGEGMLHALYFQKSINGSWKIHYNNKYVETETYNIEKQRNKPLFLPAIEGNSMAILSAYLFNWLRSGKANKYISNTNVFEHSGKFYSIAESHMPQEIDILSLKTLKNWDLNADWNRPFTSHPKKAPITGELVTLGVEPIKPFAVVGIISADGKKLVHKVDIKLNRCSLCHDIGVTQRYNVIMDFPLTIDLNRLLRGGQLIKYDKNDYARIGVMPRYGDANSVKWFEVEPNCTFHIINSFEDGNEIVVRGCRSLDSLIHEPDPSSKEFDWLSRCYEWRLNMQTGEVKEKDSCGNKVVYMDFPMINEKYVGIKHKYAYTQIVDPIASSTTQDVPKYGGLAKLYFEESCEGLSMSKREKDEAIRMEYHMFEKNTFCNGAAFVARDEGVEEDDGWIVTFVHNEDTNTSQVHIIDTKDFCGGTVAKIEMPCRVPYGFHGAFMPISFQDQ 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05435 589 PANTHER BETA-CAROTENE DIOXYGENASE 100 582 IPR004294 GO:0016702
Trre5g05435 589 Pfam Retinal pigment epithelial membrane protein 91 583 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05435 Trre-Chr5 54984596 54994831 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05435 - - gmx:100817738 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05435 5 54984596 54994831 Trre5g05435 5 54984596 54994831 ECH