Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05413 ATGCAGGCGTCGCGAGCAAGGCTATTCAAGGAGTACAAAGAGGTGCAACGAGAGAAAACGGCTGATCCTGATATTCAATTGGTTTGTGATGATTCTAACATTTTTAAGTGGACAGCTCTTATCAAGGGACCTTCAGAGACTCCTTATGAAGGGGGTGTCTTCCAGCTTGCATTTTCTGTTCCAGAGCACTATCCTCTACAACCGCCTCAAGTCCGATTTTTGACTAAAATATTTCACCCGAACGTGCATTTTAAGACTGGGGAGATTTGCCTAGATATCTTGAAAACCGCTTGGAGCCCCGCTTGGACTTTGCAGTCTGTCTGTAGGGCTATAATTGCTTTAATGGCTCATCCAGAACCCGACAGCCCATTGAATTGCGATTCAGGTAATCTTCTGCGTTCAGGTGATGTTCGAGGGTTCCAGTCCATGGCAAGAATGTACACCAGGCTTGCAGCAATGCCAAAGAAAGGCTGA 474 0.462 MQASRARLFKEYKEVQREKTADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFSVPEHYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKTAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFQSMARMYTRLAAMPKKG 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05413 157 CDD UBCc 7 148 IPR000608 -
Trre5g05413 157 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Trre5g05413 157 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 94 IPR023313 -
Trre5g05413 157 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 3 153 IPR000608 -
Trre5g05413 157 Pfam Ubiquitin-conjugating enzyme 7 147 IPR000608 -
Trre5g05413 157 SUPERFAMILY UBC-like 4 153 IPR016135 -
Trre5g05413 157 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 134 - -
Trre5g05413 157 SMART ubc_7 6 153 - -
Trre5g05413 157 FunFam protein PEROXIN-4 isoform X1 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05413 Trre-Chr5 54834702 54838091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05413 7 123 Miscellaneous Gene Families AT3G17000 35.772 3.04e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05413 K10689 - han:110865668 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05413 5 54834702 54838091 Trre5g05413 5 54834702 54838091 ECH