Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05412 ATGGTGCATCCCTTGGTTGAACGTGCCACTAGCGATTTGCTTATCGGTCCTGATTGGGCTTTGAACATCGAGATCTGTGATGTAGTCAATCGTGATCCCGGGGAATCAAAGGCTGTTGTTAAAGGTTTAAAGAAGCGGATTGGACATAGAAATTCTAAAATTCAACTTCTGGCACTAACTTTGCTGGAGACACTCGTAAAGAATTGTGGGGACATTGTCCACATGCATGTTGCCGAGAGAGAGGTTCTTCATGAGATGGTAAAAATAGTAAAGAAGAAGCCCGATTCTCATGTCAAAGAGAAGATACTGATTCTTATTGACACTTGGCAAGAAGCTTTTGGAGGCCCAAGGGCAAGGTATCCACAGTATTATGCTGCCTACCAGGAACTGTTGCATGCGGGAGCTGCATTCCCTCAAAGGTCTGAGCAATCTGCACCTGTATTCACGCCACTACAAACACAACCGTTGGGATCATACCCTCAAAATATACGCGATTCTGATGCTCGGCAACCTCCAGCTGAGTCCTCAGTAGAATCTGAGTTTCCAACCCTCAGTTTGTCCGAAATTCAGAATGCACGTGGTATAATGGACGTTCTTACCGAAATGCTTACTGCTTTAGAGCCTGGTAACAAAGAAGGGCTTCGTCAGGAAGTTATTGTTGATTTGGTGGACCAATGTCGAACATACAAGCAGAGAGTGGTACACCTTGTTAATTCAACTTCGGATGAGTCACTGCTATGCCAAGGACTAGCTCTTAATGATGATCTGCAGCGTGTACTTGCGAAGCATGAATCCATTGCTTCAGCAACTGCTGTTCAAAATCACATTGAGAAACCAAATCCTGTACCTGCCAGAGCAATTGTAGATGTTGATGATCCTTTAATTGATACTGGAGATACTAGTAAACAAACTGACGTGAGATCATCTTCTAGCGCTGAAGCAGGGTCTCAAACACTGAATCAGTTGTTGCTTCCTGCTCCCTCTACATCAAATGGCTCAGCTCCTACCTTAAAGGTTGATCCCAAATTTGATCTGCTCAGCGGTGAAGAGTACGGCTCACCAAAAGCAGATAATTCACTTGCTCTTGTTCCTGTAGGAGAACAACAGCCAGCCAGTCCTGCGCCTCAACAGAATAATGCTCTTGTTCTTTTTGATATGTTTTCTAATGGAAACAATGCGCCAACTCCTGTTAATACCCAGCCGATAGCTCCCCAATTTCAACAACAAACTATCATATCTCAAGGTGTATTTTACCCCAACGGAAGTATGCCAAATGTGGGGTCACCTCGGTACGAGCAATCACTATATACTCAAAACACAGGTCCTGCCTGGAATGGTCAGGTTGTGCAGCAGCAGCAGCAGCCACCTTCGCCTGTTTATGGTCCGCAAAGTGGTGGAGCATTTCCGCCTCCTCCATGGGAAACTCAACCTGCAGACAATGGTAGTCCAGTGGCAGGCAGTCAATACCCGCAGCCAATGCAATTCACTCATATGGTCATGACACACGTACAAACTTCCGCACCTGCTCAAGGACCTCAAGCAATGGGGTATGACCAGGCTTCTGGAATGTATATGCAGCCAAATGCTAGCCATATCCCTACAATTCCTACAATCAATAACCAGGTTCAAAGTAACCAATTCGGCTTGCCGCCTCAGTATATTCAGGGTGTTCCAGCTCCTTATATGGGTATGGTTCCACATCAAATGCAAAATGGTCCCGTGGCTTCAATGTATCCTCAACAGATGTATGGTAACCAATTCTTAGGATATGGCTATGGTCAGCAACAGCAACAACAACAACAGCAACAACAACAGCAACAGGGGCTTCAATATCTCGAGCAACAAATGTATGGCCTATCTATGAGAGATGATAATGGTCTAAGAAATCCCTACCAGGTTTCTGCTGCATCTTATGCGCCACCCGGAAAGCCTTCCAAGCCAGAGGATAAGTTATTTGGTGACCTTGTTGACATGGCAAGAGTGAAACCGAAATCTACTCCCGGCCCTTAA 2010 0.4542 MVHPLVERATSDLLIGPDWALNIEICDVVNRDPGESKAVVKGLKKRIGHRNSKIQLLALTLLETLVKNCGDIVHMHVAEREVLHEMVKIVKKKPDSHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLHAGAAFPQRSEQSAPVFTPLQTQPLGSYPQNIRDSDARQPPAESSVESEFPTLSLSEIQNARGIMDVLTEMLTALEPGNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLAKHESIASATAVQNHIEKPNPVPARAIVDVDDPLIDTGDTSKQTDVRSSSSAEAGSQTLNQLLLPAPSTSNGSAPTLKVDPKFDLLSGEEYGSPKADNSLALVPVGEQQPASPAPQQNNALVLFDMFSNGNNAPTPVNTQPIAPQFQQQTIISQGVFYPNGSMPNVGSPRYEQSLYTQNTGPAWNGQVVQQQQQPPSPVYGPQSGGAFPPPPWETQPADNGSPVAGSQYPQPMQFTHMVMTHVQTSAPAQGPQAMGYDQASGMYMQPNASHIPTIPTINNQVQSNQFGLPPQYIQGVPAPYMGMVPHQMQNGPVASMYPQQMYGNQFLGYGYGQQQQQQQQQQQQQQGLQYLEQQMYGLSMRDDNGLRNPYQVSAASYAPPGKPSKPEDKLFGDLVDMARVKPKSTPGP 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05412 669 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Trre5g05412 669 SUPERFAMILY ENTH/VHS domain 4 138 IPR008942 -
Trre5g05412 669 Gene3D - 1 148 IPR008942 -
Trre5g05412 669 MobiDBLite consensus disorder prediction 297 317 - -
Trre5g05412 669 CDD GAT_GGA-like_plant 188 266 - -
Trre5g05412 669 PANTHER TOM1-LIKE PROTEIN 1 664 IPR044836 GO:0035091|GO:0043130|GO:0043328
Trre5g05412 669 SUPERFAMILY GAT-like domain 140 267 - -
Trre5g05412 669 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Trre5g05412 669 MobiDBLite consensus disorder prediction 447 487 - -
Trre5g05412 669 FunFam TOM1-like protein 2 182 272 - -
Trre5g05412 669 MobiDBLite consensus disorder prediction 462 477 - -
Trre5g05412 669 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Trre5g05412 669 Pfam GAT domain 194 266 IPR004152 GO:0035091|GO:0043130
Trre5g05412 669 MobiDBLite consensus disorder prediction 293 317 - -
Trre5g05412 669 FunFam TOM1-like protein 2 1 148 - -
Trre5g05412 669 MobiDBLite consensus disorder prediction 156 182 - -
Trre5g05412 669 MobiDBLite consensus disorder prediction 621 669 - -
Trre5g05412 669 Pfam VHS domain 5 123 IPR002014 GO:0035091|GO:0043130
Trre5g05412 669 CDD VHS 5 130 - -
Trre5g05412 669 Gene3D - 182 274 IPR038425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05412 Trre-Chr5 54825042 54832836 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05412 - - psat:127084837 1060.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05412 5 54825042 54832836 Trre5g05412 5 54825042 54832836 ECH