Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05410 ATGGCAGATCACGATGAACAACGTCTTCAACCTCAAGACCTAGGTTACGACCCCAACTTCGTCCCTGATTCAGTTAAATCCTTCGTTGTTCATCTTTACCGTCAAATCAGAGACAAAAATGTATACGAGATCCACCAGTTGTACGAAGCTTCCTTCCAAGCCCTATCGGAGCGTCATTTCAAGGATACTCCGTGGCCTTCTGTCGACGCCGTTTCTCAATACGTCGATAACGACCATGTGTTCTGTCTTCTCTACCGTGAGATGTGGTTTCGTCATCTCTATGCTCGCCTCACTCCTACTCTTCGTCAGAGAATGGATTCGTGGGATAATTACTGTAGTTTGTTTCAGGTTGTTCTTCATGGTGTTGTCAATATGCAGCTTCCGAATCAGTGGCTTTGGGATATGGTTGATGAATTTGTTTATCAGTTTCAAAACTTTTGTCAGTACCGTGCTAAAATGAAGAACAAAACTGAACAAGAAATTGCTCTGTTGAGACAATTTGATCAGGCTTGGAATGTTTTTGGTGTGCTGAACTTCTTGCAAGCGCTTGTTGAGAAGTCAGCTATTATTCAGATACTTGAGCAAGAGAAGGAAGGGCTTGAGCAATTCACTGCTAATGATGGCTATGATTACAATGGGGGTAGCAATGTCTTGAAGGTTTTGGGGTATTTCAGCATGGTTGGCTTGCTGAGGGTTCATTGTCTCTTGGGTGATTATCATACTGGTCTTAAGTGCTTGCAACCTATTGATATTAGTCAGCAGGGTGTTTACACCACTGTTATTGGATGCCACATTACCACCATTTATCACCATGGTTTTGCCAATCTTATGCTCCGCAGATATGTGGAAGCAATTCGTGAATTCAACAAAATTCTCTTGTACATCTTTAAGACAAAGACGTACCATCAGAAATCTCCACAATATGAGCAGATATTGAAGAAGAATGAACAAATGTATGCATTGCTGGCAATTTCCCTCTCACTCTGCCCCCAAAGCAAGCTTGTTGATGAAACTGTGAACTCTCAGTTGCGAGAGAAGTACGGTGAAAAGATGAGCAGAATGCAACGATATGATGATGAGGCTTTTGCTATGTATGATGAGCTCTTCTCATATGCATGCCCAAAGTTTATCACCCCTTCAGCACCCACTTTTGAGGAGCCTCTAGTAAATTACAACCAGGATGCCTATAGACTTCAGTTGAAACTGTTCCTGTATGAAGCAAAGCAACAACAGTTGTTATCAGGTCTCAGGACCTTCTTGAAAGTATATTCAACAATCTCCCTTGAAAAACTTGCAAGTTACATGGAAGTAGATGAGCCGACCTTAAGGACTATCTTATTGACATACAAGCACAAGACCCATGCTGTTGATAGTGCTGGAAAAGTTATATCCAATGCTGATGTGAATTTCTATATTGATGATGACACAATTCATGTTGTGGAGTCCAAACCTCCCAAACGGTATGGAGATTACTTCTTGCGTCAGGTTGCTCAGCTCCAAGGGGTGATCGACGAGATGGACAATATAAAGCTGGAGTGA 1539 0.4204 MADHDEQRLQPQDLGYDPNFVPDSVKSFVVHLYRQIRDKNVYEIHQLYEASFQALSERHFKDTPWPSVDAVSQYVDNDHVFCLLYREMWFRHLYARLTPTLRQRMDSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQNFCQYRAKMKNKTEQEIALLRQFDQAWNVFGVLNFLQALVEKSAIIQILEQEKEGLEQFTANDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLQPIDISQQGVYTTVIGCHITTIYHHGFANLMLRRYVEAIREFNKILLYIFKTKTYHQKSPQYEQILKKNEQMYALLAISLSLCPQSKLVDETVNSQLREKYGEKMSRMQRYDDEAFAMYDELFSYACPKFITPSAPTFEEPLVNYNQDAYRLQLKLFLYEAKQQQLLSGLRTFLKVYSTISLEKLASYMEVDEPTLRTILLTYKHKTHAVDSAGKVISNADVNFYIDDDTIHVVESKPPKRYGDYFLRQVAQLQGVIDEMDNIKLE 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05410 512 ProSiteProfiles PCI domain profile. 284 486 IPR000717 -
Trre5g05410 512 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 13 511 IPR019382 GO:0003743|GO:0005737|GO:0005852
Trre5g05410 512 Pfam RNA polymerase I-associated factor PAF67 103 498 IPR019382 GO:0003743|GO:0005737|GO:0005852
Trre5g05410 512 Hamap Eukaryotic translation initiation factor 3 subunit L [EIF3L]. 1 501 IPR019382 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05410 Trre-Chr5 54803010 54806942 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05410 K15029 - gmx:100804691 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05410 5 54803010 54806942 Trre5g05410 5 54803010 54806942 ECH