Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05409 ATGCGCCCACCGGTTATTCTCGAATCTACCACCACAACCACCACCTTTACATCCTCTTCTTCATATTCTTCTTGTGATCGCAGGCTAAACACACTTGCAAGACACCTCATCAACGTTAACGATCAAAATCAAAATCAAATGGCTTCTTCTCCAACCGCTTCTTCTGATTCCGTCTTCGCTCATCTCGTTCGTGCTCCTGAAGATCCTATCCTAGGGGTAACTGTTGCTTACAACAAAGATCCAAGCCCAATTAAGCTCAACTTGGGTGTTGGTGCTTACCGAACTGAGGAAGGTAAACCCCTTGTGTTGGATGTAGTGAGGCGAGTTGAACACCAACTGTTGAACGACTTGTCACGCAACAAGGAGTATATTCCAATTGTTGGGCTCGCTGATTTTAATAAATTGAGTGCTAAGCTTATTTTTGGTGCTGACAGCCCTGCAATTCAAGAAAACAGGGTTACCACTGTTCAAGGCTTATCTGGTACTGGTTCACTAAGAGTTGGAGGTGAATTTTTGGCTAAACACTACCACCAACGGATTATATACTTGCCACAACCTACTTGGGGCAACCATCCAAAGATTTTCACCTTGGCAGGTTTAACTGTCAAAACATATCGCTATTATGCTCCAGCAACACGAGGGCTTGACTTTCAAGGACTTCTAGAGGATCTTGGTTCTGCCCCATCTGGATCTGTTGTTTTGCTGCATGCATGCGCACATAACCCTACTGGTGTTGATCCAACACTTGAACAATGGGAGCAGATTAGGAAGCTGATAAGATCAAAATCTTTGTTACCCTTCTTTGACAGTGCTTATCAGGGTTTCGCCAGTGGAAGTCTGGATGCAGATGCACAGCCTATTCGTTTGTTTGTTGCTGATGGTGGTGAATTGCTGGCAGCCCAGAGTTATGCAAAGAACATGGGTCTTTATGGAGAACGTGTTGGTGCCTTGAGCATTGTCAGCAAGTCAGCTGATGTTGCAAGCTTGGTTGAGAGCCAGCTGAAACTTGTGATTAGGCCCATGTACTCAAGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGATAGGGATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGGATTATCAGTATGCGCCAACAACTTTTCGATGCTCTACGTGCTAGAGGTACACCAGGTGATTGGAGTCACATTATCAAGCAGATTGGAATGTTTACTTTCACAGGATTGAATCCTGAGCAAGTTTCTTTCATGACTAAAGAGTATCATATATACTTGACATCTGATGGGAGGATTAGCATGGCTGGTTTGAGCTCCAAAACAGTCTCTCATCTCGCGGATGCCATACACGCAGCTGTAACCCGAGTTGCCTAA 1380 0.4486 MRPPVILESTTTTTTFTSSSSYSSCDRRLNTLARHLINVNDQNQNQMASSPTASSDSVFAHLVRAPEDPILGVTVAYNKDPSPIKLNLGVGAYRTEEGKPLVLDVVRRVEHQLLNDLSRNKEYIPIVGLADFNKLSAKLIFGADSPAIQENRVTTVQGLSGTGSLRVGGEFLAKHYHQRIIYLPQPTWGNHPKIFTLAGLTVKTYRYYAPATRGLDFQGLLEDLGSAPSGSVVLLHACAHNPTGVDPTLEQWEQIRKLIRSKSLLPFFDSAYQGFASGSLDADAQPIRLFVADGGELLAAQSYAKNMGLYGERVGALSIVSKSADVASLVESQLKLVIRPMYSSPPIHGASIVAAILKDRDLFNDWTIELKAMADRIISMRQQLFDALRARGTPGDWSHIIKQIGMFTFTGLNPEQVSFMTKEYHIYLTSDGRISMAGLSSKTVSHLADAIHAAVTRVA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05409 459 FunFam Aspartate aminotransferase 348 451 - -
Trre5g05409 459 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 302 315 IPR004838 GO:0003824|GO:0009058|GO:0030170
Trre5g05409 459 CDD AAT_like 86 439 - -
Trre5g05409 459 MobiDBLite consensus disorder prediction 1 20 - -
Trre5g05409 459 SUPERFAMILY PLP-dependent transferases 57 457 IPR015424 -
Trre5g05409 459 Gene3D Aspartate Aminotransferase, domain 1 64 451 IPR015422 GO:0003824
Trre5g05409 459 Pfam Aminotransferase class I and II 84 451 IPR004839 GO:0009058|GO:0030170
Trre5g05409 459 PRINTS Aspartate aminotransferase signature 233 252 IPR000796 GO:0006520|GO:0008483
Trre5g05409 459 PRINTS Aspartate aminotransferase signature 400 418 IPR000796 GO:0006520|GO:0008483
Trre5g05409 459 PRINTS Aspartate aminotransferase signature 264 276 IPR000796 GO:0006520|GO:0008483
Trre5g05409 459 PRINTS Aspartate aminotransferase signature 332 357 IPR000796 GO:0006520|GO:0008483
Trre5g05409 459 FunFam Aspartate aminotransferase 118 359 - -
Trre5g05409 459 Gene3D - 118 359 IPR015421 GO:0003824
Trre5g05409 459 PANTHER ASPARTATE AMINOTRANSFERASE 53 457 IPR000796 GO:0006520|GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05409 Trre-Chr5 54796251 54800333 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05409 K14454 - gmx:547509 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05409 5 54796251 54800333 Trre5g05409 5 54796251 54800333 ECH