Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05400 ATGGCTCCACCACCACCGCAATCTAATCGATCTCCCTCGCCGTCTCAACCGTCCGGGAAGAGTGAAGTCTCTGATCTTAAATTACAGCTCCGGCAGCTTGCTGGGAGTCGAGCTCCGGGTACTGATGATTCTAAGAGGGATCTTTTTAAGAAGGTGATATCCAACATGACTATAGGTATTGATGTTTCGTCTCTCTTTGGTGAGATGGTGATGTGCTCGGCGACATCGGACATTGTTCTGAAAAAAATGTGTTACTTATATGTTGGAAACTATGCCAAGGTCAATCCGGATCTTGCTCTGTTGACGATTAATTTTCTACAAAGGGATTGCAAGGATCAGGATCCAATGATTCGGGGACTGGCATTGAGGAGTTTGTGTTCACTCCGAGTGGCGAACTTGGTGGAGTATTTGGTTGGGCCTTTAGGGTCAGGGTTGAAGGATAATAATAGTTATGTCAGGACGGTGGCAGTTATTGGGGTTTTGAAACTGTATCATATATCAGCAACCACGTGTATTGATGCAGATTTTCCAGAAACACTGAAGCACTTGATGCTCAATGACCAAGATACTCAGGTAGTTGCAAACTGTTTGTCTGCTTTACAAGAAATTTGGACCTTAGAGTCAACCACCTCAGAGGAAGCAGCAAGGGAGAGAGAAAATCTGCACAGCAAGCCATATGTTTATTACTTTCTGAATCGCATTAAGGAATTTAGTGAATGGGCACAATGTCTTGTGATGGAATTGGTGGCCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTCCTTGAAGATAGACTCCAGCATGCAAATGGCGCTGTTGTCTTGGCAACTACAAAAGTATTTCTGCACTTGACTTTATCTATGGCCGATGTACATCAGCAGGTCTATGAGCGTATCAAAGCTCCTCTCTTAACTCAAGTGAGCTCAGGAAGTCCAGAACAATCTTACGCAATTCTAAGCCACCTGCATCTCTTGGTGATGCGTGCACCTTATATATTTTCCTCAGACTACAAACACTTCTATTGCCAGTATAATGAGCCATCTTATGTCAAAAAGTTGAAGCTTGAAATGCTAACTGCAGTTGCAAATGAAAGTAACACTTATGAGATAGTGACAGAATTATGTGAATATGCGGCAAATGTTGACATTCCAATTGCAAGGGAATCGATTCGGGCTGTTGGAAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTACAGTTTCTGGAGATGGAAAAAGACTACGTTACATCTGAAGCTCTGGTGCTTGTGAAAGATCTTCTAAGAAAATATCCTCAATGGAGTCAGGATTGTATCGCTGTTGTTGGGAATATCAGTAGCAACAATGTCCAAGAACCTAAGGCCAAGGCAGCTCTCATATGGATGTTGGGGGAATATTCTCAGGACATGCATGATGCTCCATATGTCTTGGAAAGTCTGGTTGAAAATTGGGATGAGGAGCATTCTGCCGAGGTCCGCTTACATCTTCTTACTGCAGTAATGAAGTGTTTCTTTAAGAGACCCCCTGAGACTCAGAAAGCATTAGGAGCTGCACTGGCCGCTGGTCTTGCTGACTTTCACCAGGATGTTCATGATAGGGCCTTATTTTATTACAGGCTTCTACAATACAATGTATCAGTGGCAGAGAGTGTGGTGAACCCTCCAAAACAAGCAGTTTCAGTATTTGCTGATACACAGAGCAGTGAAGTTAAAGATCGCATATTTGATGAATTTAACAGTTTGTCTGTTGTATACCAAAAGCCTTCTTACATGTTCACCGATAAGGAACACCGAGGGACATTGGAGTTTTCAGATGAACTTGGAAATCTATCCATTAATGCAGAATCCGGAGATTCTGTTGTTCCTGCTCAGAGAGTGGAGGAAAATGACAAGGATCTGCTTCTAAGTACCACAGAAAAAGATGATGTTAGAGATCCTAGTAGCAATGGTTCTGCCTATAATGCTCCTTCGTATAACGGGTCTGCCCCTTCTGCGACTTCACAACCGCTTGCAGATTTGGCATTTTCAAGTACCAGCGCCACTGGCCAAGCTCCAGCATCTGGCTTAGCAATTGATGATCTGCTTGGTTTAGATTTTTCAGTTGGGACTGCAACCGCACCGTCACCTCCCCCATTGACCCTCAACTCAAAAGCTGTACTGGATCCTGGCACATTTCAGCAGAAATGGCGTCAACTGCCAATATCCTTATCAGAGGAATGTTCTTTAAGTCCTCTTGGAATTGCATCGTTGATAACTCCCAATGCACTCCTACGGCACATGCAAAGTCATTCGATACAGTGCATTGCATCCGGCGGTCAGTCTCCTAATTTCAAGTTCTTTTTCTTTGCTCAAAAAGCGGAAGAAGCGTCAATATATCTTGTAGAGTGTGTAATCAACACTTCATCAGCCAAGTCACAGATCAAAATAAAAGCAGATGACCAAAGCTCATCACAGGCATTCTCAACTTTATTCCAATCAGCCTTGTCCAAATTTGGTTTGCCCTGA 2535 0.4296 MAPPPPQSNRSPSPSQPSGKSEVSDLKLQLRQLAGSRAPGTDDSKRDLFKKVISNMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDQDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRTVAVIGVLKLYHISATTCIDADFPETLKHLMLNDQDTQVVANCLSALQEIWTLESTTSEEAARERENLHSKPYVYYFLNRIKEFSEWAQCLVMELVAKYIPSDNSEIFDIMNLLEDRLQHANGAVVLATTKVFLHLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAILSHLHLLVMRAPYIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSEALVLVKDLLRKYPQWSQDCIAVVGNISSNNVQEPKAKAALIWMLGEYSQDMHDAPYVLESLVENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAALAAGLADFHQDVHDRALFYYRLLQYNVSVAESVVNPPKQAVSVFADTQSSEVKDRIFDEFNSLSVVYQKPSYMFTDKEHRGTLEFSDELGNLSINAESGDSVVPAQRVEENDKDLLLSTTEKDDVRDPSSNGSAYNAPSYNGSAPSATSQPLADLAFSSTSATGQAPASGLAIDDLLGLDFSVGTATAPSPPPLTLNSKAVLDPGTFQQKWRQLPISLSEECSLSPLGIASLITPNALLRHMQSHSIQCIASGGQSPNFKFFFFAQKAEEASIYLVECVINTSSAKSQIKIKADDQSSSQAFSTLFQSALSKFGLP 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05400 844 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 16 809 IPR026739 GO:0016192
Trre5g05400 844 SUPERFAMILY ARM repeat 29 599 IPR016024 -
Trre5g05400 844 SMART B2_adapt_app_C_2 722 839 IPR015151 GO:0006886|GO:0016192|GO:0030131
Trre5g05400 844 FunFam Beta-adaptin-like protein A 14 609 - -
Trre5g05400 844 FunFam Beta-adaptin-like protein 713 842 - -
Trre5g05400 844 MobiDBLite consensus disorder prediction 638 656 - -
Trre5g05400 844 PIRSF Beta_adaptin 11 844 IPR016342 GO:0015031|GO:0030276
Trre5g05400 844 MobiDBLite consensus disorder prediction 1 24 - -
Trre5g05400 844 MobiDBLite consensus disorder prediction 638 676 - -
Trre5g05400 844 Gene3D - 712 842 IPR012295 -
Trre5g05400 844 Pfam Beta2-adaptin appendage, C-terminal sub-domain 726 838 IPR015151 GO:0006886|GO:0016192|GO:0030131
Trre5g05400 844 Gene3D - 15 610 IPR011989 -
Trre5g05400 844 Pfam Adaptin N terminal region 40 552 IPR002553 GO:0006886|GO:0016192|GO:0030117
Trre5g05400 844 MobiDBLite consensus disorder prediction 657 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05400 Trre-Chr5 54711696 54720473 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05400 - - gmx:100801153 1519.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05400 5 54711696 54720473 Trre5g05400 5 54711696 54720473 ECH