Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05399 ATGGTTGTTCTTCATCTCCCAAGGTTATTATCCTTTTCCCTTTTCACAATCTCCTCTCGCCAAGCCTATTCCATTTCAAAACGCACACTCTTACACCCACCAAAATCTACACTCACGACTTCAGAACCAAACCTAGTAATATCCACAACAATAACCCCTAAACCCCAAACCCAAACCTTATCCCTCGAAAATATCTTCATTCCTCCAGATACTCATGTCACTGATAACGCAAGAATCTTAAACGGTTCAAATATATTGCTCAGTAAATACGCTTCCGATGCTCAAATTATACAAGCTGATTTTGTCAAAAGTAGTGTTAGATTTGAAGATTGTCCTTCTGATGGTCTTCCTGAATTCGCTCTTGTTGGTCGTTCCAATGTTGGCAAATCTTCGCTTCTTAATTCTATTGTTCGTCGCAATAAACTCGCTTTAACTTCAAAGAAACCTGGGAAGACACAATTGATTAATCATTTTCGTATTAACGATAGTTGGTACCTGGTTGATTTACCTGGATATGGGTATGCATCTGCGCCGCAGGAACTTAGAATGGATTGGGATAAATTCACTAAAAACTATTTCCTTAACCGGTCAACATTGGTTTCAGTTTTCCTTCTAATAGATGGTAGCATTCCCGCTAAAAAAATTGATCTTGAGTATGCACGTTGGTTGGGCGAGAATCAGGTCCCAATGACAATAATCTTCACCAAATGTGACAAACGGAAGAAGAAAAAGAATGGAGAAAAGAACGGAGGCAAAAAACCAGAGGATAATGTCAATGATTTTCAGGAGTTGATACGCGGCTACTTCCAAACCGTGCCTCCATGGATCATGACCAGTAATGTCACCCATGAAGGCCGTGATGAGATACTCCTCCATATGGCCCAACTTCGAAACTACTGGCTCAAGCACTAG 912 0.4046 MVVLHLPRLLSFSLFTISSRQAYSISKRTLLHPPKSTLTTSEPNLVISTTITPKPQTQTLSLENIFIPPDTHVTDNARILNGSNILLSKYASDAQIIQADFVKSSVRFEDCPSDGLPEFALVGRSNVGKSSLLNSIVRRNKLALTSKKPGKTQLINHFRINDSWYLVDLPGYGYASAPQELRMDWDKFTKNYFLNRSTLVSVFLLIDGSIPAKKIDLEYARWLGENQVPMTIIFTKCDKRKKKKNGEKNGGKKPEDNVNDFQELIRGYFQTVPPWIMTSNVTHEGRDEILLHMAQLRNYWLKH 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05399 303 Gene3D - 91 299 IPR027417 -
Trre5g05399 303 NCBIfam ribosome biogenesis GTP-binding protein YihA/YsxC 99 248 IPR019987 GO:0005525
Trre5g05399 303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 299 IPR027417 -
Trre5g05399 303 PANTHER MSS1/TRME-RELATED GTP-BINDING PROTEIN 31 303 - -
Trre5g05399 303 CDD YihA_EngB 118 296 IPR030393 GO:0005525
Trre5g05399 303 ProSiteProfiles EngB-type guanine nucleotide-binding (G) domain profile. 115 299 IPR030393 GO:0005525
Trre5g05399 303 Pfam 50S ribosome-binding GTPase 119 236 IPR006073 GO:0005525
Trre5g05399 303 Hamap Probable GTP-binding protein EngB [engB]. 104 297 IPR019987 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05399 Trre-Chr5 54676906 54679812 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05399 K03978 - gmx:100784426 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05399 5 54676906 54679812 Trre5g05399 5 54676906 54679812 ECH