Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05395 ATGGTAGAAGAGACTAAAGAGAAGGTTTCTGAATTCAAATGGGGAAAAAAGAAAGGGTTTGGTGGTAAAAATAAGGATGTGATTTTTTATGAATCGTTTACTTACGATGGTGTTGATTACACTCTTTATGATTCTGTGTATCTTTACAAGGAAGGTGAAATTGAACCTTTTATTGGTAAAGTAATCAAAATTTGGGAAAATGGTGATAAGAGTAAGAAAGTTAAGGTTTTATGGTTCTTTCGTCCATGTGAGATTGTGAATTTCTTGAATGGATATGAAGCACTTGAAAATGAGTTGTTTTTGGCTGCTGGTGAAGGATTAGGGCTTTCAAATATCAATCCTCTGGAAGCTATTGCTGGAAAATGCAATGTTGTTTGCATTTCAAAGGACGACAGAAATCCACATCCATCAGACAAAGATCTTCCAAATGCTGACTTTGTATGCTATCGTTTCTTCGATGTTGGGCAGCATAAAATATTGGACAAGATAGATGATAAGATTGCTGGAGTTGAAGTTAAAAATATTTTTAACAATTTATATAGTCGAAAGCTTGGTGGTCTTTCGAAACTTGGCTTAGATGAGAAAGAAGTTAGTATGAAAGTCACGATGAGTAATGAAGCGGTGACTCTTTCAAATTCAAAAAACAATCAACGTTTGATTGAAAAACTAGAAGGCAAGCGTTTTGACACTGTTGATTCTAAGCCATCATTGGGAGAAAAGCATACCTCTAGCCTTGGTTTAAAGGATGGTAGTAAATCTAATGGTGGTTTGGTCCCTATTTCTTGCGACAAGTCCTTGCCTCAAGCCAAAGAGAAAGAGAATGGGGTTTATAAGGCTTCTTTGGCTAAACAAAAGTCATCTACTAAACTACCACATTGCTCTAGAGATGGTTTGGAAATGAGAGAAATTTCTAAACCTGGAGGAAATGTCTCTAATGATAAGACCGCTTTGAAGTCTAAAATTGATTTGGAAACGGGTGGACGTGATATTGTTGGTATCTTCGATCGACAAATCAACAAGCGATTGGGGGAGGGCAAGACTTCTGAGAAGGAAAAATATGGTGTTTCTAGTGCAAAGATAACAAATAATGCTCAAAATCGAAGCAACTATGATGGTGATGATGTGAAGGACGCCCCTTCAAAAAAGCTAAAGATTGACACAGTGCCAACAAAACACTCTGGTGACAAGTTTCCTGACAGGCAAATCAACAAGCAATTGAGGGAGAGCAAGGCATACGAAGAGGAAAAATATGGCGTTTCTAGTGCAAAGATATCAAATAATGTACAAAATCGAAGGAACTATGGTGATGATGATGTGAAGGAAGTCCCTTCGAAAAATCTAAAGATTGACACGATGCCAGCTAAATTCTCTAGTGACAAGTTGCGGAAAGAATCGTCTACAACTTCTCCAAACTTGGAGCACAAGCTAAATTACCACGTAATGGAAGTTACTCAAAGACCCGAAGTTGATAGAAGCAAATGGTTTAAGCCAATGCCTTGGGAGGAAAGTATGAAAGATGCATATAAGCAAGGAAAACTTGTGCTGCTTGAAAATTTGGATCCTTCTTTAACTTCGTCAGAAGTACAGGATATTATTTGGCATGGCTTTAAAGAAAGATGTACTGCAAAGATGATCCAGAAAACCGCATGTTCTAGTCCTCATTCTGGTCAAGCTTTTGTTATATTTAAAAGAAAGGAAGCAGCAGAGTTGGTTATTAGAAAATTAGAGGAGGGCTGTTTCTTGATGTCAAATGGTCGCCCGCTTGTGGGAAGCTTTGGACTCCCTTGCTTTCCGGAAAAGAAGCGAACATTTTATGGTCATTATGCTATTGATCAACCTCGACAACGTGAGATGAAAGACGCAGTATCGACTTCACATTGTTCTCAGTCCAACAACATTGAATATGATATGGCTTTAGAGTGGTGTTTACTACAAGAAAGAGTAGAGAAAACTTGGAGAAAATTGTATCAGCGACAAAGCGAGGAGTTGAGCAAACTCAAAGCCAAGTTGAAGTCTAAAATCTAA 2025 0.3788 MVEETKEKVSEFKWGKKKGFGGKNKDVIFYESFTYDGVDYTLYDSVYLYKEGEIEPFIGKVIKIWENGDKSKKVKVLWFFRPCEIVNFLNGYEALENELFLAAGEGLGLSNINPLEAIAGKCNVVCISKDDRNPHPSDKDLPNADFVCYRFFDVGQHKILDKIDDKIAGVEVKNIFNNLYSRKLGGLSKLGLDEKEVSMKVTMSNEAVTLSNSKNNQRLIEKLEGKRFDTVDSKPSLGEKHTSSLGLKDGSKSNGGLVPISCDKSLPQAKEKENGVYKASLAKQKSSTKLPHCSRDGLEMREISKPGGNVSNDKTALKSKIDLETGGRDIVGIFDRQINKRLGEGKTSEKEKYGVSSAKITNNAQNRSNYDGDDVKDAPSKKLKIDTVPTKHSGDKFPDRQINKQLRESKAYEEEKYGVSSAKISNNVQNRRNYGDDDVKEVPSKNLKIDTMPAKFSSDKLRKESSTTSPNLEHKLNYHVMEVTQRPEVDRSKWFKPMPWEESMKDAYKQGKLVLLENLDPSLTSSEVQDIIWHGFKERCTAKMIQKTACSSPHSGQAFVIFKRKEAAELVIRKLEEGCFLMSNGRPLVGSFGLPCFPEKKRTFYGHYAIDQPRQREMKDAVSTSHCSQSNNIEYDMALEWCLLQERVEKTWRKLYQRQSEELSKLKAKLKSKI 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05395 674 Gene3D - 2 164 IPR043151 -
Trre5g05395 674 MobiDBLite consensus disorder prediction 370 398 - -
Trre5g05395 674 FunFam Bromo-adjacent homology (BAH) domain-containing protein 8 159 - -
Trre5g05395 674 SUPERFAMILY RNA-binding domain, RBD 505 589 IPR035979 GO:0003676
Trre5g05395 674 Coils Coil 653 673 - -
Trre5g05395 674 CDD RRM_SF 514 588 - -
Trre5g05395 674 MobiDBLite consensus disorder prediction 354 369 - -
Trre5g05395 674 PANTHER PROTEIN ANTI-SILENCING 1 3 673 - -
Trre5g05395 674 ProSiteProfiles BAH domain profile. 38 163 IPR001025 GO:0003682
Trre5g05395 674 SMART BAH_4 38 164 IPR001025 GO:0003682
Trre5g05395 674 MobiDBLite consensus disorder prediction 345 398 - -
Trre5g05395 674 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 512 595 IPR000504 GO:0003723
Trre5g05395 674 MobiDBLite consensus disorder prediction 231 250 - -
Trre5g05395 674 Pfam BAH domain 40 159 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05395 Trre-Chr5 54613161 54623962 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05395 - - cam:101508998 915.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05395 5 54613161 54623962 Trre5g05395 5 54613161 54623962 ECH