Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05394 ATGGGTTGCGCTCAATCAAGAATAGATAATGAAGAATCAGTTGCACGTTGCAAAGATCGAAAAAACTTAATGAGAGAAGCTGTTCTTGCTCGTAATGCTTTCGCCGCCGGTCACTCCGGTTACTCCATGGCTCTCAAAAACACCGGCGCCGCTCTCTCCGACTATGCTCACGGCGAAACTCATCTCGATGACATTCAACTTCACGCGCCTCCGCCTCTTCAATCTTCTCCTAAACCTCCACCGCCACCTCCACCGCCTATGGAAGAAACCCTCCCTCCTCCGCCTCCTCTTCCGCCTAATTTCTCACCGGCTTCGTTACAACGCTCTGTCACATTGCCTCCTGTGGCTTTACAGCACCGGAAGTCCAGCGGTGGAGGAGGAATCGCTGTTGTTGAGGAAAACATTGGCGGTGGTGCGAAAATCGAGGAAGATAAGGGATTGGGATTAGTTCACGCGCCGCCTTCTCCTCCGGGAGGTAAAGCCATGCCACCACCGCCTTTGCCGGATTCGAAGAACATGGCTTGGGATTATTTCTTCATGGATATGAACATGGCAAGAGCTTCTTTGAATGAAGAAGATGAGATTGAGAATGAAGAAGGTGAAATTGAAGGTGAAAATGTTGATGATAATGGAGGGCATGTTGAGGATGAGATTGAACCGAAAACACCGGAGAAAGTTGAGGTTGATGTGTATAACAAGGAGCATGATCATGAGGATGATGACGTGATAAGAGAAGCTAAACACATTGAACATTCTAAAACTGCTCCTGCTGAGTTTAGAAGAGCAATTAAGGTTGTTCCAACTGTTACTCTTATGCAGATTCTTGGTTCACTTGATGATCATTTTCTTAAAGCTTCTGAGACTGCTCAAGAAGTTTCCAAGATGCTTGAAGCTACTAGGTTGCATTATCATTCTAATTTCGCCGATAATCGGGGTCACATTGATCATTCTGCTAGAGTCATGCGTGTAATAACATGGAATAAGTCCTTCAAAGGTGTATCGAATGGGGAGGGTGGAAAAGATGATTTTGATTCGGAAGAGTACGAAACACATGCCACTGTTTTGGACAAGTTGTTGGCATGGGAAAAGAAGCTCTATGAAGAGGTCAAGCAAGGTGAGCTTATGAAGTTTGAATATCAAAGAAAAGTTGCAATTCTGAACAAGCAGAAGAAGCGTGGTGCCAGTGTTGAATCATTAGGAAAAACTAAAGCGGCAGTAAGTCATTTACACACAAGATATATTGTTGATATGCAGTCAATGGACTCGACAGTTTCTGAGGTGGACCATATACGCGATGCTCAGTTGTATCCAAAACTTGTTTCTCTTGTTTCTGAGATGGCCAATATGTGGGGGAATATGTTCATGCATCATGACAGCCAGCTAAAAATAGTTACAGACCTCAAATCTCTTGATATTTCTCAAGATCATAAGGAAACAACCAAACATCATTACGATCGCACCGTGCAGCTTTGGAATGTAATCCAAGAATGGCAGTCACAATTTGAGAAGCTTGTGACGCAACAGAAGCATTACATTCAAGCTCTTAATAGCTGGCTGAAGTTAAATCTCATTCCCATTGAAAGCAACCTAAAAGAGAAAATCTCGTCTCCGCCTAGAGCACAAAATCCACCGATCCAATCCCTTCTACATGCATGGCACGATTATCTTGACAAGCTTCCTGATGAGCTAGCAAAATCTGCTATTACCTCCTTTGCCGCAGTGATAAAGACAATCATACTTCAGCAGGAGGAAGAGATGAAGTTAAAGGAGAAATGTGAGGAAACTAGAAAGGAATTCTTGAGAAAAAACCAAGCTTTTGAGGAATGGTACCAGAAGCATTTATATAAAAAGGGGCCAGATGAAGCAGATGAAGTGAGTACAAACAATCCGGTCTCGGAGAAGCAGTTTGTCGTTGAGAGCTTGAAGAAGAAATTAGAAGAAGAAACTGAAGCTCACAAAAAATTGTGCGTTCAGGTAAGAGAGAAATCACTCCAGAGTCTCAAAACTCGCTTGCCTGAGCTCTTCCGTGCACTGTCGGATTATACTCATGCATGTTCCGATGCTTATGAGAAACTGAAGTTGATTGCTGCACACTCTCAAGGCAACGGTGCGGCATGA 2118 0.4367 MGCAQSRIDNEESVARCKDRKNLMREAVLARNAFAAGHSGYSMALKNTGAALSDYAHGETHLDDIQLHAPPPLQSSPKPPPPPPPPMEETLPPPPPLPPNFSPASLQRSVTLPPVALQHRKSSGGGGIAVVEENIGGGAKIEEDKGLGLVHAPPSPPGGKAMPPPPLPDSKNMAWDYFFMDMNMARASLNEEDEIENEEGEIEGENVDDNGGHVEDEIEPKTPEKVEVDVYNKEHDHEDDDVIREAKHIEHSKTAPAEFRRAIKVVPTVTLMQILGSLDDHFLKASETAQEVSKMLEATRLHYHSNFADNRGHIDHSARVMRVITWNKSFKGVSNGEGGKDDFDSEEYETHATVLDKLLAWEKKLYEEVKQGELMKFEYQRKVAILNKQKKRGASVESLGKTKAAVSHLHTRYIVDMQSMDSTVSEVDHIRDAQLYPKLVSLVSEMANMWGNMFMHHDSQLKIVTDLKSLDISQDHKETTKHHYDRTVQLWNVIQEWQSQFEKLVTQQKHYIQALNSWLKLNLIPIESNLKEKISSPPRAQNPPIQSLLHAWHDYLDKLPDELAKSAITSFAAVIKTIILQQEEEMKLKEKCEETRKEFLRKNQAFEEWYQKHLYKKGPDEADEVSTNNPVSEKQFVVESLKKKLEEETEAHKKLCVQVREKSLQSLKTRLPELFRALSDYTHACSDAYEKLKLIAAHSQGNGAA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05394 705 MobiDBLite consensus disorder prediction 206 221 - -
Trre5g05394 705 Pfam Protein of unknown function (DUF630) 1 59 IPR006868 -
Trre5g05394 705 MobiDBLite consensus disorder prediction 66 106 - -
Trre5g05394 705 Coils Coil 638 662 - -
Trre5g05394 705 MobiDBLite consensus disorder prediction 197 221 - -
Trre5g05394 705 PANTHER UNCHARACTERIZED 1 697 - -
Trre5g05394 705 Coils Coil 578 598 - -
Trre5g05394 705 SUPERFAMILY Formin homology 2 domain (FH2 domain) 162 177 - -
Trre5g05394 705 Pfam Protein of unknown function (DUF632) 271 576 IPR006867 -
Trre5g05394 705 MobiDBLite consensus disorder prediction 72 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05394 Trre-Chr5 54605638 54608553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05394 266 599 Acyl Lipid Metabolism Gene Families AT2G27090 27.441 6.85e-37 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05394 - - gmx:100807189 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05394 5 54605638 54608553 Trre5g05394 5 54605638 54608553 ECH