Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05382 ATGGGTCTAACAGAAGCATGTTCCAAATTCATTGTTGAATTTTTACAAACATTCAAACACTCACCACAAAACTCAATACCTCATCATAATGACCTTGATCAAAATCATCAACAGAATATGCTCAAGCTCGACGAAAGGATGGTTCGAGCTCTTGTTACCGTCTTTGGAATGCAAAACAATGGAAGAATCAAGAAGGAAAATGCAAGGCAAGTTGTGGAAAAACTTGGTTTGATCTATGGTTCTGATCAGAAGGATAACAAGGCCTTTCAAGAAGATGATGATGAAGAAGTGGTTGTGGAAGAGGTGCTTGGTGAATTGGAAGACATGTCAAAGAGAAGTGAGTTATTGGTTGAAGCTTTCAAAATATTTGATGAGGATGGTGATGGATATATAGATGCAATAGAGTTGAAGAGAGTGCTTGATTGTTTGGGTTTGGATAAAGGTTGGGATATGAATACAATTGAAAGGATGGTGAAGGTTGTTGATTTGAACTTTGATGGAAAAGTTGATTTTGGTGAGTTTGAATTGATGATGGGATAG 540 0.3704 MGLTEACSKFIVEFLQTFKHSPQNSIPHHNDLDQNHQQNMLKLDERMVRALVTVFGMQNNGRIKKENARQVVEKLGLIYGSDQKDNKAFQEDDDEEVVVEEVLGELEDMSKRSELLVEAFKIFDEDGDGYIDAIELKRVLDCLGLDKGWDMNTIERMVKVVDLNFDGKVDFGEFELMMG 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05382 179 CDD EFh 116 174 IPR002048 GO:0005509
Trre5g05382 179 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Trre5g05382 179 SMART efh_1 115 143 IPR002048 GO:0005509
Trre5g05382 179 SMART efh_1 153 179 IPR002048 GO:0005509
Trre5g05382 179 Pfam EF-hand domain pair 116 178 IPR002048 GO:0005509
Trre5g05382 179 SUPERFAMILY EF-hand 46 178 IPR011992 -
Trre5g05382 179 FunFam Calmodulin A 92 179 - -
Trre5g05382 179 ProSiteProfiles EF-hand calcium-binding domain profile. 149 179 IPR002048 GO:0005509
Trre5g05382 179 ProSiteProfiles EF-hand calcium-binding domain profile. 111 146 IPR002048 GO:0005509
Trre5g05382 179 Gene3D - 17 179 - -
Trre5g05382 179 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 55 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05382 Trre-Chr5 54540416 54540955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05382 116 178 EF-hand Containing Proteins AT4G20780 57.143 7.12e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05382 - - adu:107470962 255.758