Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05366 ATGAGTTGGTGGGAAGGTGTTCAAGAATCCCGGGTTCTCGTTGCCCCGGATCCTGGTACAAATGGAAATGGTTTGGGACGTATGATATTGCTCCGTCATCCCAAATCTGGAAATGCAACACAATATCTCTTTGTAAATGGGATGCTTCAAGAATTCCAATGGTTTAAGAACTTGTACGGATCTTGGTTTTTGGGAGATTATACAAGTGAAGATGGTCGACTATATTTATCCACACCCGTTGATCCAGTTTTCATTATGTTGCCCATATTTGAGGAAGCTAGAATGAAGAAAGGCGATGATTTGGGCAAGTTCAGGCAATTGGATGAAATCTTGTTTATTGATGGGTATCCAGGATATCAGCAGTTAACGTCCCTTGTAGAGAACTGTATGCAAGTAGTTTGTGAAGTCAAAGAAGTTGGATCCATAAAATTCTTTAGACTCGATGACACAAAGGTTCTGCGTTGGCTGTGCTATAAGGTTTGTCAGCTAAAACAGACACTACCCAAGTTGGACAAAAACTATGCCGTTCAATCAGACAAAGACACCTTGGTCGATGCAGTTTCGATATTAGGAGAGTATTTAAATGAAGAACACTGGTTGCAGCCTTTGTGTAACCATCTTAAGTTAAATATACTTGAGGTTACAGGAAAAGCACAAGCAAATGCTGAGGAAAATAATCCGGGTCTGTATAATGTACCACAGGAACAGAATGATGATAAGAAGGGTACAATTGTGAAGAAGGGCAGACAAGCAAAGAAGATAAAACTGGAGACAGAATCACATAACATCAAAGACATGTTTTCAAGGGCCTCCAGAAGGAAAAAGTAA 828 0.401 MSWWEGVQESRVLVAPDPGTNGNGLGRMILLRHPKSGNATQYLFVNGMLQEFQWFKNLYGSWFLGDYTSEDGRLYLSTPVDPVFIMLPIFEEARMKKGDDLGKFRQLDEILFIDGYPGYQQLTSLVENCMQVVCEVKEVGSIKFFRLDDTKVLRWLCYKVCQLKQTLPKLDKNYAVQSDKDTLVDAVSILGEYLNEEHWLQPLCNHLKLNILEVTGKAQANAEENNPGLYNVPQEQNDDKKGTIVKKGRQAKKIKLETESHNIKDMFSRASRRKK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05366 275 Gene3D - 9 79 - -
Trre5g05366 275 Pfam Ydr279p protein family (RNase H2 complex component) wHTH domain 84 170 IPR019024 -
Trre5g05366 275 Gene3D - 80 208 - -
Trre5g05366 275 MobiDBLite consensus disorder prediction 223 251 - -
Trre5g05366 275 MobiDBLite consensus disorder prediction 223 238 - -
Trre5g05366 275 CDD RNase_H2-B 12 165 IPR040456 GO:0032299
Trre5g05366 275 Pfam Ydr279p protein triple barrel domain 27 81 IPR041195 -
Trre5g05366 275 FunFam Ribonuclease H2 subunit B 9 79 - -
Trre5g05366 275 PANTHER RIBONUCLEASE H2 SUBUNIT B 2 273 IPR040456 GO:0032299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05366 Trre-Chr5 54411063 54414677 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05366 K10744 - gmx:100305835 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05366 5 54411063 54414677 Trre5g05366 5 54411063 54414677 ECH