Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05348 ATGGCAACTGTAGAAGATGTGAAAGAATTCAAAAAGGAGCACAAAGAACTTATTCCGGGATTACCAAACGAAATAGCAGAAATTTGTCTTCTTAATGTTCCTTTCCCATATCAACCTCTAGTACGCTCTGTTTCTTCTTCATGGAACAGAGCAATAACGAATCCATCTTTTCTACTCTCCAAAAAAAGCCTCTCAAATCCACACCTATTTGTATTAGCTTTCCACACAGTAACATCGAAAATTCAATGGCAATCGCTAGATCTTTCTTCTAACCGTTGGTTTATACTACCTCCGATGCCGCTTCCAAACGACGCCGTTTGTCCAACCTCCTTTGCCGCGGCTTCGTTGCCATGTCAGGGTAAGATATTCGTCATGCGAGGTACGTGTTCCGAAATGGAGACATTCGTTTACCGTACCGCCGTTAATAAATGGTCGAAAGCATCGGAAATTATCTCCGGGAGAAAATCGTTCTTCGCGGCGGAGGAAGTTAACGGAAGAATCGTGACGGTTGGTGAGAGTGGTACGGATATCTACGATCCAGAGAGTGACACGTGGAAAAGAAGTTCGAAATTTACTGGCGAATTGGATAGGTATGAGACGGTGGTTAACGGAGGGAAGTTGTACGTAACGGAAGGATGGTGGTGGCCGTTTGCGGTTAGACCAAGAGGTTGGATTTACGAATTGGAAAGTGACACGTGGCGTGAGATGGGTGAAGGAATGAAAGACGGTTGGACAGGGGTGAGTGTTTCGGTGTGTGGGAGAGTGTTTATGATACCAGACGTTGATTTAGCGATGAAGGTTTATGATGAAAAGACTGACACGTGGCGGTGTGTGGGTGGTGAGAGATTACCTAGAGAAAAAATGAAGAAACCGTTTGTTGTAAGGGGTTTAGGTGATAGAATCTATGTGGTGTCACTTGGTTTGAAAGTGGCTATTGGTAGTGTTGTTGTTGATGATTATGATGATGATGTGTGTGGTGTGAAGGTGACGTGGCAGGTTATGGAAGGATCCGAAGCTTTTAGAGAATTTGCACCTTTTAATTGCCGGGTGTTGTACGCTTGA 1062 0.4435 MATVEDVKEFKKEHKELIPGLPNEIAEICLLNVPFPYQPLVRSVSSSWNRAITNPSFLLSKKSLSNPHLFVLAFHTVTSKIQWQSLDLSSNRWFILPPMPLPNDAVCPTSFAAASLPCQGKIFVMRGTCSEMETFVYRTAVNKWSKASEIISGRKSFFAAEEVNGRIVTVGESGTDIYDPESDTWKRSSKFTGELDRYETVVNGGKLYVTEGWWWPFAVRPRGWIYELESDTWREMGEGMKDGWTGVSVSVCGRVFMIPDVDLAMKVYDEKTDTWRCVGGERLPREKMKKPFVVRGLGDRIYVVSLGLKVAIGSVVVDDYDDDVCGVKVTWQVMEGSEAFREFAPFNCRVLYA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05348 353 CDD F-box_AtAFR-like 17 57 - -
Trre5g05348 353 SMART fbox_2 21 61 IPR001810 GO:0005515
Trre5g05348 353 Gene3D - 59 328 IPR015915 GO:0005515
Trre5g05348 353 PANTHER OS02G0202900 PROTEIN 14 343 IPR045887 -
Trre5g05348 353 SUPERFAMILY Kelch motif 67 304 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05348 Trre-Chr5 54275046 54276107 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05348 - - mtr:11433037 516.153