Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05339 ATGGAAGCATCTTCCTCATCGGCGATAGCACAACAAACATGGGAATTAGAAAACAACATCATCCCAATGGAAACACCCGCAGACGATTCAATCTTCCATTACGACGAAGCTGGCCAAACCCAATTCCAACGCGATAAACCATGGGCAAACGATCCTCACTATTTCAAACGCGTTAAGATCTCTGCACTCGCTCTTCTTAAGATGGTTGTTCACGCTCGTTCTGGTGGAACAATCGAGGTTATGGGTCTTATGCAAGGTAAAACCGATGCTGATTCTATCATCGTTATGGATGCTTTCGCTTTGCCTGTTGAAGGCACTGAAACTCGTGTCAATGCTCAAGCTGATGCTTATGAATACATGGTTGATTATTCTCAGACCAACAAACAGGCTGGTAGGTTGGAGAATGTTGTGGGATGGTATCATTCTCATCCTGGTTATGGTTGTTGGCTTTCGGGGATTGATGTTTCGACGCAGATGTTGAATCAGCAATTTCAGGAGCCATTTTTGGCGGTTGTGATTGATCCGACGAGGACTGTTTCTGCTGGAAAAGTTGAGATTGGGGCTTTCAGGACTTACCCTGAAGGTTATAAGCCTCCGGATGATCCTATTTCTGAGTATCAAACTATTCCTCTTAATAAGATTGAAGATTTTGGTGTTCATTGCAAGCAGTATTATTCCTTGGATATCACTTACTTCAAGTCTTCTCTTGATTCACACCTTTTGGATCTTCTGTGGAACAAATACTGGGTGAATACATTGTCATCTTCTCCTTTATTGGGCAATGGAGACTATGTAGCTGGACAAATCTCGGATTTAGCTGAAAAGCTAGAACAAGCAGAGAATCAATTGGCACACTCACGTTTCGGGCCACTAGTAGCACCTTCACCTAGAAAGAAAGAAGAAGAGTCTCCACTTGCTAAGATCACTCGAGATAGTGCAAAGATAACAGTGGAGCAAGTACATGGATTAATGTCACAGGTAATCAAGGACACCTTGTTCAACTCTGTTCATCAAGCTAACAAGTCTCGTACAGAAACATCTGACCCTGAACCAATGATTGAAAGCTGA 1068 0.4279 MEASSSSAIAQQTWELENNIIPMETPADDSIFHYDEAGQTQFQRDKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDADSIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLVAPSPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDTLFNSVHQANKSRTETSDPEPMIES 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05339 355 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 44 342 - -
Trre5g05339 355 FunFam COP9 signalosome complex subunit 5 4 260 - -
Trre5g05339 355 SUPERFAMILY JAB1/MPN domain 57 194 - -
Trre5g05339 355 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 55 166 IPR000555 GO:0005515|GO:0008233|GO:0008237
Trre5g05339 355 CDD MPN_RPN11_CSN5 47 319 - -
Trre5g05339 355 Gene3D Cytidine Deaminase, domain 2 2 260 - -
Trre5g05339 355 MobiDBLite consensus disorder prediction 287 307 - -
Trre5g05339 355 ProSiteProfiles MPN domain profile. 58 195 IPR037518 -
Trre5g05339 355 Pfam Cop9 signalosome subunit 5 C-terminal domain 254 334 IPR040961 -
Trre5g05339 355 SMART pad1_6 57 194 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05339 Trre-Chr5 54199723 54203425 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05339 K09613 - gmx:100784909 679.863