Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05330 ATGGCCATTTCCCTATCCACTACACTTCAATTTCTCACTCTCAATTCATCCAAATCCACACTAACATCAATTCTCACAATTCCAACAACACGATATCAATTCTCAACCATCACCATGAACCTCCGCACTACCAAATCCGAACCAGTAACCACCTCTTCAGCATCTTCTTCCTCAATGCAGTACGTGCCAGAGCAAGATTCTAACGAAATGGAACGTATTTTCAACCAAACATTCCAAAGGTATTCATCCAACAACACTAAAAGAAGTGGTAAAGGTACAGCAATCGTGTGGTTCAGGAACGATCTCAGAGTTTTGGATAATGAAGCTCTCTACAAGGCTTGGATTTCCTCACAAACTCTATTGCCTGTTTATTGTATTGATCCTCGACTCTTTGCCACTACTCATTATTTCGGATTTCCGAAAACCGGAGCATTGAGAGCACAATTTCTCCTTGAATCTTTGGCTGACTTGAAGAAGAATCTAATGAAACGAGGACTTAATTTGCTTATTCAACATGGGAAACCCGAAGATATTATTCCTTCTCTAGCTAAAGCTTTTGGAGCTCATACAGTATATGCACAGAAAGAAACTTGCAGTGAGGAGCTAAATGTTGAAAAGTCTGTCAGCAGATGTCTTCAGCAAGTGGTGCTACCATCTGAAGAATCCGCTGCGGCATCAACATCTTCAAACAGCCATCCTAAGTTACAGTTTGTTTGGGGAACCACCATGTACCACCGTGATGATCTTCCTTTTGATGTAACTTGTTTGCCGGATGTTTATACTCAATTCCGTAAGACTGTTGAAGCCAAATGTGTCGTGCACTCATGCATCAAACTGCCAACTTCACTTGGACCGCCTCCCCCAATTGAGGATTGGGGATGTCTTCCTTCATTGGAGCAGCTGGGACTTTCTTCACAGAATGTTAGCAAGGGGATGAAATTTGTCGGGGGTGAAACTGCTGGACTGAGCAGAATATATGAATACTTTTGGAAGAAGGATTTACTGAAGGTATATAAAGAGACCCGAAATGGGATGTTAGGGCCTGATTATTCTACTAAATTCTCGCCATGGCTTGCATCCGGAAGCTTGTCTCCTCGTCTCATACACGAAGAGGTAAAGAGATATGAGAATGAAAGACAAGCAAACAGTTCTACCTACTGGGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTCTATCAGTCAAATGTGGAAATTCTATTTTCCATAAAGGTGGACCTAGAAATGTTCAGCATAATTGGAGCCAAGACATGAAATTATTTGAATCATGGAGAGATGGTTGTACAGGGTATCCTCTAATAGACGCCAACATGAAAGAATTATCAACTACAGGTTTCATGTCAAACCGAGGGCGGCAGATTGTATGTTCCTTTCTAGTTCGTGACATGGGCATAGATTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTATGGATCAGGAGTTGGGAATGATCCAAGGGAAGACCGTTATTTCAGCATACCAAAACAAGCACAAACATATGACCCAGAAGGCGAATATGTTGCATACTGGTTACCACAGTTACGAGCAATCTCAAAAGATAAAAGGAACTTTCCTGGTAATTTATATATTCGTCAAATTGTGCCTCTCAAGTTTGGAACAACTAGTAGACACAATAAGGAGGACAAGTCGCCTGGTGCAAGAAGAGGTAATGAACGAAGATGGAACCGGAGATAA 1764 0.4144 MAISLSTTLQFLTLNSSKSTLTSILTIPTTRYQFSTITMNLRTTKSEPVTTSSASSSSMQYVPEQDSNEMERIFNQTFQRYSSNNTKRSGKGTAIVWFRNDLRVLDNEALYKAWISSQTLLPVYCIDPRLFATTHYFGFPKTGALRAQFLLESLADLKKNLMKRGLNLLIQHGKPEDIIPSLAKAFGAHTVYAQKETCSEELNVEKSVSRCLQQVVLPSEESAAASTSSNSHPKLQFVWGTTMYHRDDLPFDVTCLPDVYTQFRKTVEAKCVVHSCIKLPTSLGPPPPIEDWGCLPSLEQLGLSSQNVSKGMKFVGGETAGLSRIYEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRLIHEEVKRYENERQANSSTYWVLFELIWRDYFRFLSVKCGNSIFHKGGPRNVQHNWSQDMKLFESWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRAISKDKRNFPGNLYIRQIVPLKFGTTSRHNKEDKSPGARRGNERRWNRR 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05330 587 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 91 291 IPR036155 -
Trre5g05330 587 Gene3D HUPs 56 240 IPR014729 -
Trre5g05330 587 PANTHER CRYPTOCHROME 92 559 IPR002081 -
Trre5g05330 587 Pfam DNA photolyase 94 272 IPR006050 -
Trre5g05330 587 PRINTS DNA photolyase signature 437 453 IPR002081 -
Trre5g05330 587 PRINTS DNA photolyase signature 496 510 IPR002081 -
Trre5g05330 587 PRINTS DNA photolyase signature 457 475 IPR002081 -
Trre5g05330 587 Gene3D - 241 410 - -
Trre5g05330 587 Pfam FAD binding domain of DNA photolyase 390 544 IPR005101 -
Trre5g05330 587 NCBIfam DASH family cryptochrome 93 536 IPR014133 GO:0003913|GO:0006281
Trre5g05330 587 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 92 234 IPR006050 -
Trre5g05330 587 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 312 545 IPR036134 -
Trre5g05330 587 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 411 565 - -
Trre5g05330 587 MobiDBLite consensus disorder prediction 564 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05330 Trre-Chr5 54142159 54146402 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05330 K25656 - gmx:100783312 928.702