Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05311 ATGCTGAGGAAGAGAAGTAGATCAATCCAGAAAGATCAACACAAAATGGGTCGTTCTGATGCTAATTCTGATGCTAATGCTGATCACTATTCTCAATCTCATGCTTTTGGGAGAAATATCAAAGGCAACTCAATTTTCAATGTTCCTTGTTTGTTTGTGGGTTTGGGTCCTAAAGGGTTGTTGGATTCTGATTCAGTTAGAAGTCCAACTTCACCTTTAGATACTAAAGTTCTTTCAAATTTAGGTAATAATACTGTTAGGAACCAAAGATCGTCGCTTCTTGAGGGGAACCACCAAAGGAGTTGGGATTGTTGCAAAGTTGGTCTAAGTATTGTTGAATCTTTGGAAGATTGTAGTAACTGTTCTAGGTTTTGTCTAAGTCCTCAAAGGATGATCAAAACTCCAATTTGTCAAACTTGTATGGATTCTTTTGAGTCATCCGAGTCTTTGCCTAAAGATTTTTGTACTGAAAATGGATCTGTTATCCAAAAGGGTGAAAGTGAATCCAATGTCCTTTTTGAGATTGGAGAAACTAGCTTTGAGCTTGATGAACCATTTGGGAGAACTAGGTCTAGTTCATTGGATTCATGCAAATCATTGAAAGCTGATTTTGGATTAGCTAATACCAAAACTGATTCAGATGTTGATGATTTTGCTATGAAAGATGCAACATTTCATGTTAGCTCTTCTCCTCATTTTATTGGAGGAAGCCAGAACTCAAATCCCTTTGCACTGGCAGAGTCGAAATCAAACACTCTTCCTATTTCCAATGAAAGTTTGAAGTCTCTATCAGCTAGTGAGATTGAGCTTTCTGAGGATTATACATGTGTGATTTCCCATGGTCCTAATCCCAAAACAACTCATATTTTTGGTGATTGTATCTTGGAAACTCATCGTGATTTATTTATTAAAAACCATTTTATGAATGAAGAGAATGAGAAGGAGAATGGAATGACTCTGATTGGCTTACAGACTCCAAACCAATATCCCTCTGGTGCCTTCCTAAGTTTCTGTGACCATTGCAACAAGAAATTGGAGGAGGGGAAAGATATTTATATCTATAGAGGTGAAAAAGCATTTTGCAGCTTAACTTGCCGCGAAATGGAGATTATGATTGATGAGGAGCTTGAGGAATCCAACCCTCCTTCTGAAAACTCTCCAAAACCAAAACTTGGTGAGCAAATTTTTGAAACAGGCATTCCAACAACCCCATAA 1215 0.3753 MLRKRSRSIQKDQHKMGRSDANSDANADHYSQSHAFGRNIKGNSIFNVPCLFVGLGPKGLLDSDSVRSPTSPLDTKVLSNLGNNTVRNQRSSLLEGNHQRSWDCCKVGLSIVESLEDCSNCSRFCLSPQRMIKTPICQTCMDSFESSESLPKDFCTENGSVIQKGESESNVLFEIGETSFELDEPFGRTRSSSLDSCKSLKADFGLANTKTDSDVDDFAMKDATFHVSSSPHFIGGSQNSNPFALAESKSNTLPISNESLKSLSASEIELSEDYTCVISHGPNPKTTHIFGDCILETHRDLFIKNHFMNEENEKENGMTLIGLQTPNQYPSGAFLSFCDHCNKKLEEGKDIYIYRGEKAFCSLTCREMEIMIDEELEESNPPSENSPKPKLGEQIFETGIPTTP 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05311 404 MobiDBLite consensus disorder prediction 376 404 - -
Trre5g05311 404 MobiDBLite consensus disorder prediction 1 29 - -
Trre5g05311 404 ProSiteProfiles Zinc finger FLZ-type profile. 333 377 IPR007650 -
Trre5g05311 404 PANTHER FCS-LIKE ZINC FINGER 11 1 402 IPR044585 -
Trre5g05311 404 Pfam zinc-finger of the FCS-type, C2-C2 327 375 IPR007650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05311 Trre-Chr5 53963180 53964625 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05311 - - gmx:100779553 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05311 5 53963180 53964625 Trre5g05311 5 53963180 53964625 ECH
Trre1g00763 1 5777094 5778492 Trre5g05311 5 53963180 53964625 PCT