Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05290 ATGGTTGGAATGTCGAATAATTTTGTTTCCGAGTCAGTAACCAGCCAGCAGATGGCTCAATTGGAGCCTATTATGAACAAGGTTGATTCGTCGGGACTCGTGCGTCCTGTATCAAGTGATTCTTTGCCACATCATCAGGGAACCTCGAATGGTGAACCTACGTCTCAAGGTTTACCACTTTCCAATAGGCAGATCAAAATGTTGAATAATTTAGGGTCAAATCATCTGTCAGCAGCTCCTAAGCGGAAGGCAACGATTGAACTGCCTCCGGGTAGTTTCATAACACCTAGCAAGCGGGAGAAACCGATGGGAAATAGACCTTGGATGCAGCAAGGATCAAATAAAGGTTCTCAACAGATGCAATCCCCATCAAATGCTTCTAGGATGCAGCATTCGGCATCATTTAGTAAGAGAAAAACACAAACGGATTCTGCCTCCAGCAAACCTGGGACACCTCGGTCCTCAAATTCTAAAAATCAGAATGCACAGATGAAAGAATCCTCCAAGGTTCAATCTGAGTCTTCTGAGAATGTTAGGTCCAAGATGAGAGAATCGTTAGCTTCTGCTCTGGCGTTGGTATCCCAGCAAGATAAACCTCTGGTCTCAAACAATGACAAACCAAATGACGCTGCCAATAGCTCTCAATGTGCTGGATCAGCATCAGCGTCTGCTGACACTGCTCCGGAGCAAAGGCAGGAAATTTGTCAATCTGTTAACTCCTCTTTAGCTGCGGCTGATTCCATTAACCATGTGATGGGAGAGCACATGAATAGTGCATCTGTTGAAGATTTTTCTGAAAAATCTAAGGACTATGTAGCGGGTTTCGCAAACGTGTTAAACACTGAAGATATGCTGAGTTTCGATAAGCAAGATTTCCAGTCTAACTACACTTTGACTACTGATGATGTTCCTTTCAGTGACTTCTTTGTGAAAGATGAACTTTTGCAGGGAAATGGTCTTTCCTGGGTATTATCTGATATGGACCATATGGTGGACATGGATGATCAAAGGGAAAGTCAAACTACGATAGAGAAGAAATTGGAACCTGAGGAAACAGGTGGAGTTTGTACGCAGGTGGTCCCTTTACCTGAACTTTTAGCATCAAGGATAGAAGAAGAGCTCTTCAAACTGTTTGGAGGTGTGAACAAGAAATACAAAGAGAAGGGAAGGTCTCTTTTGTTCAACTTGAAAGATCGCAATAATCCCGAACTCAGAGAAAGGGTTATGTTTGGTAAAATTCCTCCAGAACAATTATGTTCCATGACTGCCGAGGAACTTGCTTCAAAGGAACTTTCCGAGTGGCGGATAGCCAAGGCTGAGGAGTTTGATAAAATGGTGGTTTTACCCGATTCAGATGTTGATATTAGACGTCTAGTCAGGAAAACGCATAAAGGTGAGTTTCAAGTGGAAGTTGAACACGAAGACAATGTTCCAGTGGAAGAGGTGTCCGGTGGCAAAACTTCTGTTGTTCGAAGCCGGCCAGTTCAAAAGGGCGTGGAAGCCATTTCTCCTTCCAAACCTGATGGAATCAAAAGCAATGTGAACACTGACAATGAAAAGAGCAACTTACAAACGGATAATCAATTTTCCATCACCATTTCATCCAATGATGGGACTGATCCAATGCAAGGGCTTATGAGTGATGATAATGCATCGAAGGTCCCTGACTTTCCTGATCAATCTTTTGACGAATTCATGGAAGCCCTTGATTCTGAGCCACCATTTGAAAATTTACCTGTAGAGTCTGGAAAAGCACCTAGCTCAGACAAGGATGTTTCTGGGGTTGGATCAAAATCAAAATCTTCTGATTTAACTCCAAGTGAGCAAGATGATGTCAGTGCTAATAAGTCTGATAAGCTTCAAAGCACAGATGCTGCGGAGGGAAAACAAGTTAACACCGAAGCAGGGTCCATTTTGTCTGATACAAAATACAGTGAAAGTCGACCTGACACAAAGCCGACTGACGGTCATACCAAGGAAATGTCAACTGATGGCAAAAAGTCAATTTCCAATGATGCTGAGTCAAGAGCTAGTAAGTTTCATGCAGAAGAGAAATATGGCAAGGATAATGTGTTGAAAACTACAGTCCCTATTATGGGTGAAATCCTCTGGGAGGGAATGCTTCAGCCAAACATCTCAACCACTGATTCAGTCATTAGCATATTCAAAAGTGGTGAGAAAACTTCTACTAAAGACTGGCCTGGATTTCTCGAGATCAAGGGAAGGGTTCGACTGGATGCATTTGAAAAATTTCTGCTAGAGCTTCCACAGTCAAGAACTCGTGCCATCATGGTTTCACATTTTATTTCCAAAGGCTCCACCCCTGAGGAGCAAGCAACTCTCCGTGAGGTGGCTGACTCGTATATTTTGGACGAGAGAGTGGGATTTGGGGAACCTGTGCATGGAGTTGAACTTTACTTTTGCCCACCACATAAGAAAACAGTTGAAATGCTCAGCAAGATACTTCCAAAGGAACAAATTGAGGCAGTTAATTCTATTGATAATGGTCTAATTGGTGTTATTGTATGGAGAAAAACTAATATAACTACATCTATATCTCCCAACACGCAATCACACAACAAACATAGCTCTAAAAGGCAAAACTTTAGTAGAAGACAGCAAGATACTAATGTGAATGCCAATTCTACCCATAATGCAGTGCCCTCTTCGGGGTTTAAGACAACCGTGAGTGAACCTCCGGGTGGTGATGATGATGATGATGATGATGACGACGTTCCTCCTGGATTCGGGCCACCGGCTGCCCGGGTCGAGGATGACCTTCCGGAGTATAATTTTTCCGGTAGTTCAAATCCATCATCACACTTGGTTCAAAAACCTATGGGATCAGTTATGGTCCCATCTCACTCGGTTGGCCAAACCCCGTCACGTCCTGCACAACAAATGAGAGAACTTGTACACAAATATGGGCAAAACAAAACAACTGTATCTTCAGTAAACTGGCAGGACAAATTTAGGGGGTCAATTCAGCCTTGGAATGATGACGACGATGATATACCTGAATGGCAACCTCAAATCAACAACCAGAATCAGTTTCCTACTCAACAAACTATGCATAATTTTCATATTAGACCTCATATTGTGAATCAATCATTTGCGGGTTTACCCCAGCAACAAATTATGCCGACACAATATCTGCAACCCCCAATGAATGTAACACATGTACAACGAAACTTTGCCCCTCAGTGGGTTCCTCCAATCCAGGGTAACAATATACAACCAAATGGTGCACCACCATATGGAACACCTACACAAGGAACTCCATGGTCTCAACATGTTTCTAGAAGTAGAGGACTTTAG 3318 0.4286 MVGMSNNFVSESVTSQQMAQLEPIMNKVDSSGLVRPVSSDSLPHHQGTSNGEPTSQGLPLSNRQIKMLNNLGSNHLSAAPKRKATIELPPGSFITPSKREKPMGNRPWMQQGSNKGSQQMQSPSNASRMQHSASFSKRKTQTDSASSKPGTPRSSNSKNQNAQMKESSKVQSESSENVRSKMRESLASALALVSQQDKPLVSNNDKPNDAANSSQCAGSASASADTAPEQRQEICQSVNSSLAAADSINHVMGEHMNSASVEDFSEKSKDYVAGFANVLNTEDMLSFDKQDFQSNYTLTTDDVPFSDFFVKDELLQGNGLSWVLSDMDHMVDMDDQRESQTTIEKKLEPEETGGVCTQVVPLPELLASRIEEELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGKIPPEQLCSMTAEELASKELSEWRIAKAEEFDKMVVLPDSDVDIRRLVRKTHKGEFQVEVEHEDNVPVEEVSGGKTSVVRSRPVQKGVEAISPSKPDGIKSNVNTDNEKSNLQTDNQFSITISSNDGTDPMQGLMSDDNASKVPDFPDQSFDEFMEALDSEPPFENLPVESGKAPSSDKDVSGVGSKSKSSDLTPSEQDDVSANKSDKLQSTDAAEGKQVNTEAGSILSDTKYSESRPDTKPTDGHTKEMSTDGKKSISNDAESRASKFHAEEKYGKDNVLKTTVPIMGEILWEGMLQPNISTTDSVISIFKSGEKTSTKDWPGFLEIKGRVRLDAFEKFLLELPQSRTRAIMVSHFISKGSTPEEQATLREVADSYILDERVGFGEPVHGVELYFCPPHKKTVEMLSKILPKEQIEAVNSIDNGLIGVIVWRKTNITTSISPNTQSHNKHSSKRQNFSRRQQDTNVNANSTHNAVPSSGFKTTVSEPPGGDDDDDDDDDVPPGFGPPAARVEDDLPEYNFSGSSNPSSHLVQKPMGSVMVPSHSVGQTPSRPAQQMRELVHKYGQNKTTVSSVNWQDKFRGSIQPWNDDDDDIPEWQPQINNQNQFPTQQTMHNFHIRPHIVNQSFAGLPQQQIMPTQYLQPPMNVTHVQRNFAPQWVPPIQGNNIQPNGAPPYGTPTQGTPWSQHVSRSRGL 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05290 1105 MobiDBLite consensus disorder prediction 930 944 - -
Trre5g05290 1105 Gene3D - 334 429 IPR036575 GO:0006351
Trre5g05290 1105 MobiDBLite consensus disorder prediction 870 896 - -
Trre5g05290 1105 MobiDBLite consensus disorder prediction 592 611 - -
Trre5g05290 1105 SMART mid_6 320 437 IPR003618 GO:0006351
Trre5g05290 1105 MobiDBLite consensus disorder prediction 1073 1105 - -
Trre5g05290 1105 MobiDBLite consensus disorder prediction 573 681 - -
Trre5g05290 1105 Pfam Transcription factor S-II (TFIIS), central domain 362 441 IPR003618 GO:0006351
Trre5g05290 1105 Pfam SPOC domain 701 843 IPR012921 -
Trre5g05290 1105 MobiDBLite consensus disorder prediction 618 644 - -
Trre5g05290 1105 MobiDBLite consensus disorder prediction 107 175 - -
Trre5g05290 1105 CDD SPOC_TFIIS 703 843 - -
Trre5g05290 1105 MobiDBLite consensus disorder prediction 25 183 - -
Trre5g05290 1105 MobiDBLite consensus disorder prediction 32 76 - -
Trre5g05290 1105 MobiDBLite consensus disorder prediction 508 546 - -
Trre5g05290 1105 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 91 933 - -
Trre5g05290 1105 MobiDBLite consensus disorder prediction 481 559 - -
Trre5g05290 1105 ProSiteProfiles TFIIS central domain profile. 335 454 IPR003618 GO:0006351
Trre5g05290 1105 MobiDBLite consensus disorder prediction 851 946 - -
Trre5g05290 1105 MobiDBLite consensus disorder prediction 645 681 - -
Trre5g05290 1105 SUPERFAMILY Elongation factor TFIIS domain 2 362 430 IPR036575 GO:0006351
Trre5g05290 1105 MobiDBLite consensus disorder prediction 196 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05290 Trre-Chr5 53840328 53845522 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05290 - - gmx:100808809 1428.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05290 5 53840328 53845522 Trre5g05290 5 53840328 53845522 ECH