Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05280 ATGGAGAACACACTCGACAAAAACTCAACCGTCAAGCAAATTTTAGATCTACTCTCTACACTCGGTTACGTCGACGCCACTGATTCCGATGCACCGCCGTATCAGAAAATCACCGACGGCCTCTCTTGGATCATCGCCGCCCTCAACCCCAACCTAATACACGATCAAAACAACGCACATTGGATTGAAGAATCTCTGAAATTACTAGAATGCCCTCACTCTCTTCAACAAACTCATATTCAAGATCTTGATATTGATACTCTTTTACCAGTTATTAAGTTGCTTACTTCACGAATGAAATTAACACAAGAACTTTGTATCATCAATGAGGTTTGTCACCATGAAAATACTATTGAATTTGAACAAGAGGATGACATTAAAACTACTTCGATAAATGACAATTTGGATGAACTGAATCACCGGAAGATGAATGTCGTGGAGAAGTTGGATGAGTTAAGAGCGAGAATCAATAAGGAAGGTGCTGATTCTGCGGTGCAGAAGTTGTACACTTTGATGAAGTCTTTGAAGGATCTTGAAAGGAAGGAAAATCAGTTTATATTCAACCGTGATTCTAAGCAGTCAGAACTTCAATCCGAGATTGATGAATTAGAGAGGAAAATAGAAAATGACTGTGATAGCAAGAGTCTTACTGATGGGATTCAACATTCTTTTAGTGAATCACTCGAAAGAGTCGATTTGATGAAAAAGGAACTTGCTGCTAGACTAAGGGATGTAGTGGCAGCAAGACGACAGATTGATGATCTACCGTGCCAATCAGAAATCGTCCAGTATGAACACCGGCTCTCAGAACTGTATGCTCAAATCCAGGGAAAACATCGACAGACTCGCAAATACTATTCCACTTACAATGCTCTTTTGGAAATAAAAGAATTGATGTTAAAGGAAACATCTTTATTGAATTCGATCATTTCACAGTTTCAAGAGGCCTTTAGTAGCACTGATGGCCGTGCAAAACTTGTTCATTCCATGGAAGGAATTGTCAAGGGAAGTCAACAGAAACTAGAAAAGGTTCAACTAGGGCTTCAAGAAGAAGAGAGAAACCGCAATGACCTTAAGGATAGATATGCTGCAGAAATCGGTGAGCAAAAGCGCTGCTATTCTCTGATGAAAGCTTTTCAGGAAAAATGTTCCAAGGAGAGGTTACGTTATGGCGTTTTGTTTTGGAGTTCTATAAAGGTAAAATTAGATTCAAGGGCAGAAGATTTGAAATATTATTAA 1239 0.3906 MENTLDKNSTVKQILDLLSTLGYVDATDSDAPPYQKITDGLSWIIAALNPNLIHDQNNAHWIEESLKLLECPHSLQQTHIQDLDIDTLLPVIKLLTSRMKLTQELCIINEVCHHENTIEFEQEDDIKTTSINDNLDELNHRKMNVVEKLDELRARINKEGADSAVQKLYTLMKSLKDLERKENQFIFNRDSKQSELQSEIDELERKIENDCDSKSLTDGIQHSFSESLERVDLMKKELAARLRDVVAARRQIDDLPCQSEIVQYEHRLSELYAQIQGKHRQTRKYYSTYNALLEIKELMLKETSLLNSIISQFQEAFSSTDGRAKLVHSMEGIVKGSQQKLEKVQLGLQEEERNRNDLKDRYAAEIGEQKRCYSLMKAFQEKCSKERLRYGVLFWSSIKVKLDSRAEDLKYY 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05280 412 Coils Coil 189 213 - -
Trre5g05280 412 Coils Coil 334 368 - -
Trre5g05280 412 Coils Coil 135 155 - -
Trre5g05280 412 PANTHER FIDIPIDINE 6 104 IPR039116 -
Trre5g05280 412 Pfam CCDC93, coiled-coil domain 12 141 IPR019159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05280 Trre-Chr5 53761059 53769595 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05280 - - gmx:100806690 491.5