Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05264 ATGGGTACTGTTTCTGCTAGATACCCATTTGGAATCTCTTTCCATTCCCAATCCCTAAATCGCAGGTTGGAATGTTCAATCTCTCAATTTCCCCTTCACTTCGACCTTTCCAGAATCACTTTATATTCTGCTTCCGAGGGATTAATTCATCGAGTTTGTGCACGGCCTGATATTGATGATTTCTACTGGGAGAAAGTTCCAACGCCTATTCTTGATACGGTTGAAAGCCCTCTTTGCTTGAAGAATTTATCTCTGAGGGAGTTGAAACAACTAGCTGCTGAAATCCGTTTAGATTTGTCTTCTATTATGTTAGGTACACCAATATCACTAAATCCAAGTATGGCTGTGGTGGAGCTAACAGTTGCAATACATCATGTTTTTCATGCTCCAGTAGACAAGATATTGTGGGATGTCGGTGATCAAACATACGCACATAAGATACTTACAGGAAGGAGATCGCTCATGAAGACAATCAGACAAAAGAACGGCCTTTCTGGTTTTACTTCTCGATTTGAGAGTGAATATGACGCATTTGGTGCAGGTCATGGATGCAACAGCATATCTGCTGGACTTGGAATGGCAGTTGCACGGGACATTAAAGGAAGAAGAGAACGTGTAGTTGCAGTTATCAGCAATTGGACAACTATGTCCGGTCAAGTGTATGAGGCAATGAGCAATGCAGGATATTTGGACTCAAATATGGTGGTAATTTTGAACGATAGCCGCCACTCTTTACTACCCAAAATTGAGGAGGGATCGAAAACCTCTGTCAATGCCCTATCTAGTACCCTTAGCAGGCTCCAATCCAGCAAATCTTTCCGGAGGTTTAGAGAAGCTGCTAAGGGTGTTACAAAACGTATTGGCATGGGCATGCATGAATTGGCAGCTAAAGTTGATGAATATGCTCGTGGTATGATGGGGCCACCAGGTTCTACTCTATTTGAAGAGCTTGGGTTGTATTACATAGGGCCAGTAGATGGACACAATATTGAAGATCTAATAAGCGTTCTTCAAGAAGTAGCTTCCCTGGATTCAATGGGTCCCGTCTTGGTTCATGTGATAACTGATGAAAATCAGGTTGACGAACACAATAAAAAAAGTTACATAACAGACAAGCAGATGGATGAATCTTTCAGTTCTGATTTGTTAGATAATGCTGGTCGGCCTCAAACATATGGTGATTACTTTGTGGAGACCTTGGTTGCCGAAGCTGAGAAAGACAAAGATATTGTGGTTGTTCATGCAGGATTCACAATAGAGCCATCACTCGAACTGTTTCGGGAAAAATTTCCTGATAGGATTTTTAATGTGGGAATTGCTGAGCAACACGCTGTGACATTTGCTTCTGGTTTGTCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTTCTTTTCTACAGAGAGCCTATGACCAGGTGATTCATGATGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATTACAAGTGCAGGATTGGTGGGTTCTGATGGTCCCCTCCAGTGTGGAGCATTTGATATAACGTTCATGTCATGCCTACCAAACATGATTGTCATGGCACCATCTGACGAGGTTGAACTTGTGCACATGGTGGCCACTGCTGCTCGTACCAATGACCGTCCAGTTTGCTTTCGGTATCCTAGGGGTGCCTTGGTTGGGGAAGACCACACTATACATGATGGAATCCCGATTGAGATTGGAAAGGGAAGAATTCTTGTTGAAGGTAAAGATGTTGCCTTACTGGGATATGGATCAATGGTTCAGAACTGTCTAAAGGCCCGTTCACTTCTTGCAAAACTCGGCGTTGAGGTGACTGTTGCGGATGCAAGGTTCTGCAAGCCCCTTGATATCAAGCTTCTAAGGCAGCTATGTAAACACCATTCTTTTCTAATTACTGTTGAGGAAGGATCCATTGGAGGGTTTGGTTCCCATGTTGCTCAATTTATTGCTCTTGATGGACTTCTCGACGGAAGAATTAAGTGGCGACCAATTGTCTTGCCAGACAGTTATATTGAACATGCATCACCAAACCAACAACTTGACCAAGCAGGGTTGACCGGACATCATATTGCTGCCGCAACATTGAGTTTGCTGGGCCGTACCCGTGAAGCTCTATCGTTTATGTGTTTGTGA 2136 0.4316 MGTVSARYPFGISFHSQSLNRRLECSISQFPLHFDLSRITLYSASEGLIHRVCARPDIDDFYWEKVPTPILDTVESPLCLKNLSLRELKQLAAEIRLDLSSIMLGTPISLNPSMAVVELTVAIHHVFHAPVDKILWDVGDQTYAHKILTGRRSLMKTIRQKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRRERVVAVISNWTTMSGQVYEAMSNAGYLDSNMVVILNDSRHSLLPKIEEGSKTSVNALSSTLSRLQSSKSFRRFREAAKGVTKRIGMGMHELAAKVDEYARGMMGPPGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLDSMGPVLVHVITDENQVDEHNKKSYITDKQMDESFSSDLLDNAGRPQTYGDYFVETLVAEAEKDKDIVVVHAGFTIEPSLELFREKFPDRIFNVGIAEQHAVTFASGLSCGGLKPFCIIPSSFLQRAYDQVIHDVDQQKIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELVHMVATAARTNDRPVCFRYPRGALVGEDHTIHDGIPIEIGKGRILVEGKDVALLGYGSMVQNCLKARSLLAKLGVEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAQFIALDGLLDGRIKWRPIVLPDSYIEHASPNQQLDQAGLTGHHIAAATLSLLGRTREALSFMCL 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05264 711 Pfam Transketolase, C-terminal domain 568 691 IPR033248 -
Trre5g05264 711 SUPERFAMILY TK C-terminal domain-like 563 699 IPR009014 GO:0003824
Trre5g05264 711 Gene3D - 63 359 - -
Trre5g05264 711 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 73 698 IPR005477 GO:0008661|GO:0016114
Trre5g05264 711 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 568 700 - -
Trre5g05264 711 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 68 451 IPR029061 -
Trre5g05264 711 SMART Transket_pyr_3 390 555 IPR005475 -
Trre5g05264 711 Gene3D - 390 561 - -
Trre5g05264 711 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 71 355 IPR005477 GO:0008661|GO:0016114
Trre5g05264 711 Gene3D - 568 699 IPR009014 GO:0003824
Trre5g05264 711 CDD TPP_PYR_DXS_TK_like 394 549 - -
Trre5g05264 711 Pfam Transketolase, pyrimidine binding domain 391 552 IPR005475 -
Trre5g05264 711 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 388 578 IPR029061 -
Trre5g05264 711 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 46 706 IPR005477 GO:0008661|GO:0016114
Trre5g05264 711 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 70 700 IPR005477 GO:0008661|GO:0016114
Trre5g05264 711 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 389 557 - -
Trre5g05264 711 CDD TPP_DXS 110 355 IPR005477 GO:0008661|GO:0016114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05264 Trre-Chr5 53653714 53659257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05264 428 650 Acyl Lipid Metabolism Gene Families AT1G55510 24.583 5.08e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05264 K01662 - gmx:100793268 1181.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05264 5 53653714 53659257 Trre5g05264 5 53653714 53659257 ECH