Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05246 ATGAGCCACAGAAACTTCTCAACTAGTTCTGGTAGTGGAAATGCTAGCAGGACATTTGAGTTTGGAAGGACTCATGTGGTTAGACCTAAAGGGAAGCACCAAGCAACTATAGTTTGGTTACATGGTATTGGCGACAATGGTTCGAGCTGGTCGCAACTATTGGAAACTCTTCCTCTTCCAAATATTAAATGGATTTGTCCAACCGCTCCTACGAGGCCTGTAGCCTTATTTGGTGGATTTCCTTGCACTGCTTGGTCTGATGTTGGTGATATTTCGGAAGACGCTCCTAATGATGTGGAGGGCTTAGATGCTTCTGCAGCACATGTTGCTAATCTTCTGTCAACAGAGCCTCCAAATATCAAACTTGGTATTGGGGGTTTCAGTAATGGTGCTGCAACTGCACTTCACTCAGCTACATGTCATGTTTTGGGACGCTATGGAAATGGAAACGTTTATCCTATCAACTTAAGCGCAATTATTTCATTAAGCGGCTGGCTTCCTTGTTCAAGGACATTGAGAAACCGGATCGAGGGATCACATGATGGTATAAGGCGTGCGGCGTCGTTGCCCTTATTTCTCGGCCATGGAAGGGCTGATGATGTGGTTGCATATGAACATGGAGAGAATTCTGCAAGGACCTTAAGCGGAGCTGGATTTCAGAATCTTATATTTAGAAGCTATAACGGGTTGGGTCACTATACAGTTCCTGAAGAGACTGATGAAGTTTGCAGATGGCTAACTGCAAATTTGGCACTTGAGGGGTTAAGATTGAACTAG 777 0.4453 MSHRNFSTSSGSGNASRTFEFGRTHVVRPKGKHQATIVWLHGIGDNGSSWSQLLETLPLPNIKWICPTAPTRPVALFGGFPCTAWSDVGDISEDAPNDVEGLDASAAHVANLLSTEPPNIKLGIGGFSNGAATALHSATCHVLGRYGNGNVYPINLSAIISLSGWLPCSRTLRNRIEGSHDGIRRAASLPLFLGHGRADDVVAYEHGENSARTLSGAGFQNLIFRSYNGLGHYTVPEETDEVCRWLTANLALEGLRLN 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05246 258 Gene3D alpha/beta hydrolase 12 251 IPR029058 -
Trre5g05246 258 Pfam Phospholipase/Carboxylesterase 25 247 IPR003140 GO:0016787
Trre5g05246 258 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 255 - -
Trre5g05246 258 SUPERFAMILY alpha/beta-Hydrolases 25 249 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05246 Trre-Chr5 53578126 53581902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05246 11 254 Acyl Lipid Metabolism Gene Families AT5G20060 68.293 3.73e-126 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05246 K06130 - gmx:100811642 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05246 5 53578126 53581902 Trre5g05246 5 53578126 53581902 ECH