Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05244 ATGAGCAGACCAGGAGATTGGAACTGCAGGACATGCAACCATCTCAACTTTCAGAGAAGAGAATCTTGCCAGCGATGCGGAGAATCAAGATTGATTTCATCCGGTGCTGATTTCGGGGCCGCTTTTGTTGGTGGAAGAGGCTCTACTTCGCCTTTTCCTTTCACCACTGGCCCTGATGTCCGCCCCGGTGATTGGTATTGTACGGTTGGAAATTGTGGAGCTCACAATTTCGCCAGCCGTTCAAGTTGCTTCAAATGTGGTGCACCTAAGGATATTGACACTTTCTCCTCTGACTCCTCTGACATGCCACGGTTATTGAGGTCACCATATGGTTTTGGAGGCGGAAGCAGCGGTACCTCTACCCGCCCTGGCTGGAAATCCGGTGATTGGATATGTACCAGGTCCGGATGTAACGAGCATAACTTTGCTAATAGAATGGAGTGTTACCGATGCAATGGCCCGAGAGACTCTAGTACCGGAAGATCTTCCTATTTATCTTGA 501 0.493 MSRPGDWNCRTCNHLNFQRRESCQRCGESRLISSGADFGAAFVGGRGSTSPFPFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKDIDTFSSDSSDMPRLLRSPYGFGGGSSGTSTRPGWKSGDWICTRSGCNEHNFANRMECYRCNGPRDSSTGRSSYLS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05244 166 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Trre5g05244 166 SUPERFAMILY Ran binding protein zinc finger-like 120 158 IPR036443 -
Trre5g05244 166 SUPERFAMILY Ran binding protein zinc finger-like 57 93 IPR036443 -
Trre5g05244 166 ProSiteProfiles Zinc finger RanBP2 type profile. 126 157 IPR001876 -
Trre5g05244 166 SUPERFAMILY Ran binding protein zinc finger-like 2 31 IPR036443 -
Trre5g05244 166 FunFam Ran-binding zinc finger protein 55 92 - -
Trre5g05244 166 PANTHER ZINC FINGER PROTEIN 58 158 - -
Trre5g05244 166 SMART zf_4 63 89 IPR001876 -
Trre5g05244 166 SMART zf_4 5 29 IPR001876 -
Trre5g05244 166 SMART zf_4 128 154 IPR001876 -
Trre5g05244 166 Gene3D - 119 157 - -
Trre5g05244 166 Gene3D - 2 31 - -
Trre5g05244 166 Gene3D - 56 92 - -
Trre5g05244 166 FunFam Ran-binding zinc finger protein 116 157 - -
Trre5g05244 166 ProSitePatterns Zinc finger RanBP2-type signature. 130 151 IPR001876 -
Trre5g05244 166 ProSiteProfiles Zinc finger RanBP2 type profile. 61 92 IPR001876 -
Trre5g05244 166 Pfam Zn-finger in Ran binding protein and others 61 90 IPR001876 -
Trre5g05244 166 Pfam Zn-finger in Ran binding protein and others 3 27 IPR001876 -
Trre5g05244 166 Pfam Zn-finger in Ran binding protein and others 126 155 IPR001876 -
Trre5g05244 166 ProSitePatterns Zinc finger RanBP2-type signature. 65 86 IPR001876 -
Trre5g05244 166 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05244 Trre-Chr5 53555659 53556328 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05244 - - mtr:11431968 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05244 5 53555659 53556328 Trre5g05244 5 53555659 53556328 ECH