Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05204 ATGGGCAGCTTGGATTTAGAAGGAAAGGATTTTGTGCTTACTACTACTCAAGTGAGCATTGGTGGATTTGACACTGATGTTAAAGCTTCTGAATTAGTGTCATTCTTGGAGTCAGAAATCGGATATGTAGACAGATGTCGACTGAAGACTTCTTGCACTCCTCTAGAGTCGTATCCAGATTTTACGGTGATTGATACAAAAAAGATTGAAAAAACCGATGACTATAACAAGGTGGCACCTCATGCCTTTGTGCATTTTACTAGGCCGGAATCTGCAACTGAGGCCATCAACGCTGCAGGCCGCTGTGGCCTAATTTTGAATAAGAAGGTATTAAAGATCATCAGTGGGCCACAGAATCCAAACTTCCTGAACCAAAGGAGGCGAACTGAGGCTCCTTTTAAGATGTCGGATGTAATCGTTGAAATTGGGACTTTGGTTGGCCAAACAGATTTTACTGTTGCTTGGAGAGGACCTGCTAAAGGGGTAAACTTTCTAGTGGACCCTTTTGACAGCATGTGCAAGCTTTGTTTTAATCAGGATACTGCGTTCGAATTGAAAGGAATAGCTAAAAAAGTAGTGATGAAGTGTGATTTTAAGATGGGATTCTTGGTTAGAGACATAAACGAGATCCTAAGATATGATGATACAGCTCATCTTGTTGTTTTATTACATCTAGCTTCATCACCTTTGGTGTGGTATAGAACTGCCGATGATGACATTGAAGAATCGGTCACTATTGATTTGTTGGACGACGATGATCCTTGGATCAGAACGACCGACTTTACCCCTAGTGGAGCCATTGGTCGATGTAATTATTATAGAATTTCAATCCCACCCCGTTATGGTGCAAAATTGACTAAGGCCTTGGAGTATCTGAGACGCCAAAGAGTGCAAAGGGTTCCGCTTAAACGACCACCTAGGATACTAAATGAGCCCGATTTTGGAGTGCCCATGTCAGATGCTTTCTTCTACATAGGCTTTCAGAAGGACATTTCTTTTGATATAATGTTCTTGGTTAATGCAATTGTACATAGAGGAATATTCAATCAATATAGTTTATCAAACATGTTTTTTGAATTGCTGAGAAATCAACCCAAGGATGTCAATGTGGCTGCCCTGAAGCACTTATGTACTTACAAGCGCCCAGTGTTTGATGCAGCTAAGAGGCTGGAAATGGTCCAAAAATGGTTGCTCAGAAATCCCAAACTTTATCAGATCTCCAAGCAGTCCGATGACATTATGGAGGTTAGAAGGCTGGTTGTTACTCCAACAAAAGCCTATTGTATAGCACCCGAAGTTGAATTGTCTAATAGGGTTCTGAGAAAATTTAGTGAAGTTTCAGACCGTTTCTTGAGAGTCACCTTCATGGATGAAGGAATGCAGACATTGAATAATTATGCTCTTAACTATTATGCTGCTCCTATCGTGAAGGAAATCACATCAACCTCCTTTCAACAGAAGACAAAAATTTATAAAAGAGTGAGGACAATCCTGGAAGATGGTTTTTACTTTTGTGGCCGAAAATATTCTTTTTTAGCTTTTTCGTCCAATCAACTTAGAGACCGTTCTGCTTGGTTTTTTGCCGAGGAAAAGAACATCAGTTGTGATTATATAAGAAATTGGATGGGAAAGTTTAATCAGAAAAATATTGCAAAGTGTGCGGCTAGGATGGGGCAATGCTTCTCATCCACATATGCATCGGTGGAAGTTCATGAAGTCAACTCGATGCTACCCGATGTGGAGAGGAATGGTTATGTTTTCTCTGACGGCATCGGTATCATCACTACCGATCTTGCAGTTGAAGTTGCTCAAAAATTGAACTTGGACAAGGTACCCTCTGCTTACCAGATCAGGTATGCTGGTTTTAAAGGGGTTGTAGCCTGTTGGCCTGCTAAAGGGGATGGAATCAGACTTTCTCTGAGACCCAGCATGAACAAGTTTCAATCCAATCATACTACCTTGGAGATTTGCACATGGACTAGGTTTCAACCTGGTTTTCTTAACAGGCAGATTATAACATTGCTTTCAGCTTTGGATGTGCCTGATGAAATATTCTGGGAAATGCAGGAGGGGATGATTTCAAAGTTAAATCAAATGCTTGTTGATGCAGAAGTGGCCTTTGATGTTCTTACCAAGTCTTGTGCTGAGCATGGAAATGCTGCAGCAATAATGTTAAGTTGTGGCTTCAGTCCCAAAACAGAACCTCATCTTAGAGGCATGCTAAATTCTATACGTGCTGCGCAGCTTTGGGGCCTTCGAGAAAAGTCTAGGATTTTTGTTTCATCTGGGAGATGGTTGATGGGCGTCTTAGATGAGTTGGGTGTTCTCGAACAAGGGCAATGCTTTGTGCAAGTGTCAACTCCTTCTCTTGAAAATTGTTTCTCAAAGCACGGCTCAAGATTTTCAGAGACAGAAACCTTGCATGTGGTAAAAGGTCTTGTGGTTATAGCTAAAAATCCATGTCTTCACCCTGGAGATGTGAGAATTTTGGAGGCAGTTGATGTCCCGGCTTTACATCATTTATATGACTGTCTTGTTTTCCCTCAAAAGGGTGAACGACCCCATTCAAATGAAGCTTCTGGAAGTGACCTTGATGGAGATCTGTATTTTGTCACATGGGATGGAAATCTCATTCCACCTAGTAAGAGGAGCTGGCCACCTATGGATTACACTGCTCAAGAAAGCCGGCTTCAAACACGGCAAGTCACTATCAGGGACATCATAGATTTTTTTGTCAAAAACATGGTGAATGAGCAATTGGGCTCAATCTGCAATGCACATGTGGTGCATGCTGATTCCAGTGCTGATGGTGCCTTGGATCAAAAGTGCCTTGACTTGGCTGAGTTAGCAGCCACAGCTGTTGATTTCCCCAAGACCGGGAAGCTTGTCACAATGCCCCCTAGTTTGAAGCCCAAACTGTACCCCGATTTTATGGGTAAAGAGAAGCACCAGTCATACATGTCAAAGAAAATCCTCGGTAAACTTTACCGACGGATCAAAGATGCTTACGATAAAGATATTGATGTTCCTGAATTGAACTGTGCGTCTGGTGATATACATTATGATGCAGATCTCGAGGTTCCAGGATCTGCTGAATTTATTGCTGATGCATGGGAGCAAAAGTGCTCTTATGATGGCCAGTTAACTGGATTGTTGGGCCAATACAAAGTGAAAACAGAGGAAGAAGTTGTCACCGGACAGATTTGGTCCATGCCAAGGTACAACAGTAGAAAGCAAGGGGAACTGAAGGAGAGGCTAAAGCACTCATACAGTTCCCTCAAAAAAGAATTTAGGCATAGTTTTGACAAACTGAATTCTGATGTTGGAGACTTAAGTGATGAAGAAAAAAATTTGTTGTATGAAAGGAAAGCTTCTGCCTGGTATCAGGTGACATATCATCCTAAATGGGTGAAGCAGTCTCTTGATTTGCAAATGAAATCTTCAGATAACCAAGATGCAACTAGTTTGGGGAATATCTTGATGTTGAGTTTTCCCTGGATTGCTGTTGATTACCTTGCTCGCACAAAGATAAGGAATCGAAAAGTTGGAAGTTTTGATTCAACTAAGGCAGTTGGTTCTCTTGCGAAATATCTATCTGAAAGGTTATAG 3609 0.4151 MGSLDLEGKDFVLTTTQVSIGGFDTDVKASELVSFLESEIGYVDRCRLKTSCTPLESYPDFTVIDTKKIEKTDDYNKVAPHAFVHFTRPESATEAINAAGRCGLILNKKVLKIISGPQNPNFLNQRRRTEAPFKMSDVIVEIGTLVGQTDFTVAWRGPAKGVNFLVDPFDSMCKLCFNQDTAFELKGIAKKVVMKCDFKMGFLVRDINEILRYDDTAHLVVLLHLASSPLVWYRTADDDIEESVTIDLLDDDDPWIRTTDFTPSGAIGRCNYYRISIPPRYGAKLTKALEYLRRQRVQRVPLKRPPRILNEPDFGVPMSDAFFYIGFQKDISFDIMFLVNAIVHRGIFNQYSLSNMFFELLRNQPKDVNVAALKHLCTYKRPVFDAAKRLEMVQKWLLRNPKLYQISKQSDDIMEVRRLVVTPTKAYCIAPEVELSNRVLRKFSEVSDRFLRVTFMDEGMQTLNNYALNYYAAPIVKEITSTSFQQKTKIYKRVRTILEDGFYFCGRKYSFLAFSSNQLRDRSAWFFAEEKNISCDYIRNWMGKFNQKNIAKCAARMGQCFSSTYASVEVHEVNSMLPDVERNGYVFSDGIGIITTDLAVEVAQKLNLDKVPSAYQIRYAGFKGVVACWPAKGDGIRLSLRPSMNKFQSNHTTLEICTWTRFQPGFLNRQIITLLSALDVPDEIFWEMQEGMISKLNQMLVDAEVAFDVLTKSCAEHGNAAAIMLSCGFSPKTEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETETLHVVKGLVVIAKNPCLHPGDVRILEAVDVPALHHLYDCLVFPQKGERPHSNEASGSDLDGDLYFVTWDGNLIPPSKRSWPPMDYTAQESRLQTRQVTIRDIIDFFVKNMVNEQLGSICNAHVVHADSSADGALDQKCLDLAELAATAVDFPKTGKLVTMPPSLKPKLYPDFMGKEKHQSYMSKKILGKLYRRIKDAYDKDIDVPELNCASGDIHYDADLEVPGSAEFIADAWEQKCSYDGQLTGLLGQYKVKTEEEVVTGQIWSMPRYNSRKQGELKERLKHSYSSLKKEFRHSFDKLNSDVGDLSDEEKNLLYERKASAWYQVTYHPKWVKQSLDLQMKSSDNQDATSLGNILMLSFPWIAVDYLARTKIRNRKVGSFDSTKAVGSLAKYLSERL 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05204 1202 PANTHER RNA-DEPENDENT RNA POLYMERASE 15 1194 IPR007855 GO:0003968
Trre5g05204 1202 CDD RRM_SF 18 113 - -
Trre5g05204 1202 Pfam RNA dependent RNA polymerase 421 999 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05204 Trre-Chr5 53176648 53180693 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05204 K11699 - gmx:100795178 1992.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05204 5 53176648 53180693 Trre5g05204 5 53176648 53180693 ECH