Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05169 ATGAAGCACACTTCATCCGAAGCAGTTCCATCTCTATCATCCGTACCATCATTCACGGACCAATCACAACCAGCCACGTCATCGTCTTCTTCATCTTCTTCTTCCGCCGCAGCGGCGGAAGACCTTGCAATAGGCTCTCGCGACGGAGGTAGCGCTCAAGAAGCGGTTGTTGTGGATCGGAGAGGAGAGTACTCCGCTGTATGTAGATGGACGGTTAAGAATTTTCCGAAAGTAAAAGCTAGGTCACTGTGGAGCAAGTATTTTGAGGTAGGTGGTTACGATTGTCGTCTATTGATATACCCTAAAGGTGATTCACAGGCTCTACCTGGTTATGTTTCTGTTTATCTTCAAATCATGGACCCTCGTGGAACTTCTTCTTCAAAATGGGAATGTTTTGCTAGTTATCGTTTAGCATTTGTCAATGTTGTTGATGATTCTAAAACTATTCATCGTGATTCTTGGCATAGGTTTTCTACTAAGAAGAAATCACATGGTTGGTGTGATTTCACACCTGCTTCTACTATTTTTGATCCTAAATTGGGCTTTTTGTTTAATAATGATTCTGTTTTGGTAACTGCTGATATTCTTATTCTTAATGAGTCTGTTAATTTCACCCGCGATAACAATGAGTTGTTGTCTTCGTCGCTTTCTTCTTCAAATTCGATATCTTCATCGGTTGTTGTGGCTCCTGTTTCTGATGTTTTGAGTGGGAAGTTTACGTGGAAAGTTCATAATTTTAGTTTGTTTAAGGACATGATTAAGACGCAGAAGATAATGAGTCCGGTTTTTCCTGCTGGGGAGTGTAATTTGAGGATTAGTGTTTACCAGAGTTCGGTTAATGGGGTTGAGTATCTTTCGATGTGTTTGGAAAGTAAGGATACGGATAAGAATGTGGTTTTGTCTGATAGGAGTTGCTGGTGTTTGTTTAGAATGTCTGTTTTGAATCAGAAGCCTGGTTCAAATCACATGCATAGGGATTCTTATGGTCGCTTTGCGGCTGATAATAAGAGTGGTGACAATACTAGTTTGGGTTGGAATGATTATATGAAGATGTCTGATTTCGTTGGATCGGATTCGGGGTTTGTGGTGGATGACACCGCGGTTTTTAGTACCTCGTTTCATGTGATCAAGGAATTTAGCAGCTTCTCCAAGAATGGGGCAGTCATTGGTGGGAGAAGTGGCAGCGGTGCAAGGAAGTCAGATGGCCACATTGGAAAGTTCACTTGGAGGATTGAGAATTTCACAAGGTTGAAGGATTTATTGAAGAAGAGGAAAATCACGGGTCTTTGCATTAAGAGCAGGAGGTTTCAGATTGGTAATAGGGATTGCCGTCTTATTGTTTATCCCAGAGGGCAGTCTCAGCCACCATGCCACCTTTCGGTGTTTCTTGAAGTTACGGATTCAAGAAATACTTCAAGCGATTGGAGTTGCTTTGTTAGTCATCGACTGTCAGTTGTAAACCAGAAGATGGAGGACAAATCTGTCACCAAGGAATCTCAGAACCGCTACTCTAAAGCTGCAAAGGATTGGGGCTGGCGTGAATTTGTGACACTCACTAGTCTATTTGATCAAGATTCAGGTTTTCTTGTTCAGGACACTGTCATTTTCTCAGCTGAAGTTCTCATATTGAAAGAGACATCAATAATGCAGGACTTTACTGAGCATGTTTCTGAGTTAAACGGCAGCAGTTCCCTTGTTGATAGTAGTGGGAAAAGAAGTTCATTTACATGGAAAGTGGAGAATTTCCTTTCTTTTAAGGAAATAATGGAGACTCGAAAAATCTTCAGTAAATTCTTTCAGGCTGGTGGATGTGAACTTCGAATTGGTGTGTATGAGTCATTTGATACCATATGTATTTATTTGGAGAGTGACCAGGCTGTTGGTTGCGATCCTGATAAAAACTTCTGGGTCAGATACCGAATGGCTGTTGTGAATCAAAAAAACCCAGCCAAGACTGTATGGAAAGAATCTTCTATCTGCACAAAAACTTGGAATAATTCTGTTTTGCAATTCATGAAGGTGTCTGATATGTTAGAAGCAGATGCAGGGTTTCTTTCCCGTGACACCGTTGTTTTTGTGTGTGAAATATTGGATTGCTGCCCTTGGTTTGACTTTTCAGACTTAGAGGTTTTTGCTTCGGAGGATGATCAGGATGCATTGACAACTGATCCTGATGAACTCATCGACTCTGAAGACAGTGAAGGGTTAAGTGGAGATGAGGAAGATATTTTTAGAAATCTTCTTTCCAGAGCTGGATTCCATTTAACTTATGGAGATAATCCTTCACAGCCACAGTTTACTTTACGAGAGAAACTTTTAATGGATGCTGGTGCAATTGCTGGGTTTTTGACTGGACTTCGGGTTTATCTTGATGATCCTGCAAAAGTAAAGCGTTTGCTTCTGCCTACGAAGCTCTCCGGTAGTTCTGATGGGAAGAAGGCCACCAAGGCTGATGAGTCTTCCCCAAGTTTGATGAATTTGCTGATGGGAGTTAAAGTCTTACAGCAAGCAATCATCGATTTACTATTGGATATAATGGTTGAGTGCTGCCAGCCTTCTGAAGTGGGTCCTGTTGTTGATTCTGTTGATGAATGCTCTAAGCTTTCTCCAGATAGCAGTGGAAACACTAGCCCACTTGGACGTGATAATGAAAATAGAGCAGTGGAGTCTGCACGAGTTCTTGTTCATGAGAGATTGAGTTCTGTTGTCGAAGAAAGCAGTAGTACGTCTTCTGTACAGAGCTTTGATTTAAATGTGAATGGTTTTCAGGAAAAAGCTCTTCCTGGACAGCCTACTTGTCCACCAGAAACGTGTGCCACTGTTTCAGAAAATGCGTCATTTCGGTCAAAGACCAAGTGGCCAGAGCAGTCCGAGGAGCTCTTAGGTTTGATTGTAAATTCACTAAGAGCTTTGGATGGTGCCGTTCCACAAGGTTGTCCAGAGCCAAGACGGCGACCTCAGTCAGCACAGAAAATTGCTCTCGTATTGGATAAGGCTCCTAAGCATTTGCAAGCAGACCTGGTTGCTTTGGTACCCAAATTGGTTGAGCAGTCAGAACACCCACTGGCTGCACATGCACTCCTTGAGCGCCTACAACTGCCAGAGGCTGAACCTGCTTTACGAATACCTGTTTTTGGGGCGCTTAGTCAATTGGAGTGTGGTAGTGAAGTGTGGGAGCGCATTCTGTTTCAGTCATTTGCACTTTTGACGGATTCAAATGATGAACCTCTGGTTGCAACAATAGATTTTATATTCAAAGCGGCATCTCAATGCCAACACCTCCCTGAAGCAGTTAGGGCTGTTCGTGTCAGGCTGAAAAATTTAGGTCTTGATGTGTCGCCTTTTGTCCTTGACTTTTTGAGCAAGACTATAAATAGTTGGGGGGATGTTGCTGAAACCATCCTGAGGGACATTGATTGTGACGAGGATTATGGTGAAAGTTGCACAGCTCTGCCGTGTGGGATTTTCTTATTTGGTGAACATAGCGCTGCTGCTACTGGACTGCACATGATTGATGAGCAAGCTTTTCGTGCTAGTCGTCATTTTTCTGATATTTATATATTGTTAGAAATGTTGTCTATACCTTGTCTTGCTGTTGAAGCTTCTCAAACATTTGAGAGAGCCGTAGCTCGAGGTGCAATAGGTGCTCAGTCTGTAGCTCTGGTATTGGAAAGTCTTCTTTCCCAAAGATTGAACAATAATGCCAGAACTGAAAACTTTCAACATTTAGATGGTGCAACAGAGGAAGATGCCTGTGAGCAATTGGTTCAAAGGGATGATTTCACATCAATTCTTGGTCTTGCAGAAACTTTGGCCCTCTCCAGGGACCTATGTGTGCAAGAATTTGTGAAATTGCTCTACGTGATAATCTTTAGATGGTATGCTAATGAATCTTATCGGGGGAGGATGCTGAAGAGGCTTGTTGACCGGGCCACCAGCACTACTGATAATGGCCGTGGAGTAGATTTTGATTTGGATATCTTGGTTACTTTGGTCTGTGAGGAACAGGAGTATATTAGGCCTGTTTTGAGTATGGTTCGTGGAGTTGCTGAACTTGCAAATGTTGATCGAGCTGCTCTGTGGCACCAGTTATGTGCTAGTGAAGATGAAATTATCCGTGTTCGTGAAGAATGCAAAACTGAAATTTCTAATATGGCTAAGGAAAAAGCTACTTTATCACAAAAGCTGAGTGAATCCGAGGCCACAAACAGTCGACTCAAGTCCGAAATGAAGGCCGAGGTAGATCGGTTTTCTCGGGAAAAGAAGGAACTAACTGAACAAATTCAAGAAGTTGAGAGTCAGCTTGAATGGCATCGCTCAGAGCGGGATGATGAAATATTAAAGCTCTCTGCAGAGAAGAAAGTTCTTCATGATCGTTTGCATGATGCAGAGACACAACTTTCTCAGTTGAAGTCTCGGAAACGTGATGAACTAAAGAAAATAGTCAAGGAGAAAAATGCACTTGCTGAAAGATTGAAAAATGCTGAAGCTGCACGCAAGAGATTTGATGAAGAATTGAAAAGATTTGCAACAGAAAACGTATCTCGGGAAGAAATCCGGCAATCGCTTGAGGATGAAGTTCGTAGATTGACTCAAACAGTTGGACAAACCGAGGGAGAAAAGCGGGAAAAGGAAGAGCAGGTTGCCAGGTGTGAAGCATATATTGATGGCATGGAATCAAAGTTGCAGGCCTGCCAGCAATATATCCACACCCTTGAGGCCTCACTCCAGGAGGAAATGTCACGACATGCCCCATTATATGGTGCTGGTCTGGAGGCTCTATCAATGAAAGAGTTGGAAACAATATCACGTATTCATGAAGAGGGCCTGAGACAGATCCACGCCCTTCAACAGCGTAAAGGGAGTCCAGCTGGGAGTCCTCTTTTGAGTCCCCATGCTCTCCCTCACAGCCATGGATTATATCCTTCTGCGTCTGTGGGACTTCCTCCCTCAATCATCCCAAATGGCGTAGGTATCCATAGCAATGGACATGTGAATGGTGCAGTAGGACCCTGGTTTAATCACCCTTGA 5031 0.4295 MKHTSSEAVPSLSSVPSFTDQSQPATSSSSSSSSSAAAAEDLAIGSRDGGSAQEAVVVDRRGEYSAVCRWTVKNFPKVKARSLWSKYFEVGGYDCRLLIYPKGDSQALPGYVSVYLQIMDPRGTSSSKWECFASYRLAFVNVVDDSKTIHRDSWHRFSTKKKSHGWCDFTPASTIFDPKLGFLFNNDSVLVTADILILNESVNFTRDNNELLSSSLSSSNSISSSVVVAPVSDVLSGKFTWKVHNFSLFKDMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTDKNVVLSDRSCWCLFRMSVLNQKPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFVGSDSGFVVDDTAVFSTSFHVIKEFSSFSKNGAVIGGRSGSGARKSDGHIGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQKMEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSIMQDFTEHVSELNGSSSLVDSSGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGCDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLSRDTVVFVCEILDCCPWFDFSDLEVFASEDDQDALTTDPDELIDSEDSEGLSGDEEDIFRNLLSRAGFHLTYGDNPSQPQFTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSSDGKKATKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEVGPVVDSVDECSKLSPDSSGNTSPLGRDNENRAVESARVLVHERLSSVVEESSSTSSVQSFDLNVNGFQEKALPGQPTCPPETCATVSENASFRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKIALVLDKAPKHLQADLVALVPKLVEQSEHPLAAHALLERLQLPEAEPALRIPVFGALSQLECGSEVWERILFQSFALLTDSNDEPLVATIDFIFKAASQCQHLPEAVRAVRVRLKNLGLDVSPFVLDFLSKTINSWGDVAETILRDIDCDEDYGESCTALPCGIFLFGEHSAAATGLHMIDEQAFRASRHFSDIYILLEMLSIPCLAVEASQTFERAVARGAIGAQSVALVLESLLSQRLNNNARTENFQHLDGATEEDACEQLVQRDDFTSILGLAETLALSRDLCVQEFVKLLYVIIFRWYANESYRGRMLKRLVDRATSTTDNGRGVDFDLDILVTLVCEEQEYIRPVLSMVRGVAELANVDRAALWHQLCASEDEIIRVREECKTEISNMAKEKATLSQKLSESEATNSRLKSEMKAEVDRFSREKKELTEQIQEVESQLEWHRSERDDEILKLSAEKKVLHDRLHDAETQLSQLKSRKRDELKKIVKEKNALAERLKNAEAARKRFDEELKRFATENVSREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSMKELETISRIHEEGLRQIHALQQRKGSPAGSPLLSPHALPHSHGLYPSASVGLPPSIIPNGVGIHSNGHVNGAVGPWFNHP 1676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05169 1676 Coils Coil 1520 1547 - -
Trre5g05169 1676 ProSiteProfiles MATH/TRAF domain profile. 236 373 IPR002083 GO:0005515
Trre5g05169 1676 Coils Coil 1375 1441 - -
Trre5g05169 1676 CDD MATH 69 195 IPR002083 GO:0005515
Trre5g05169 1676 CDD MATH 574 696 IPR002083 GO:0005515
Trre5g05169 1676 PANTHER TRAF-LIKE FAMILY PROTEIN 28 1675 - -
Trre5g05169 1676 MobiDBLite consensus disorder prediction 866 883 - -
Trre5g05169 1676 ProSiteProfiles MATH/TRAF domain profile. 404 540 IPR002083 GO:0005515
Trre5g05169 1676 SUPERFAMILY TRAF domain-like 234 379 - -
Trre5g05169 1676 SUPERFAMILY TRAF domain-like 573 697 - -
Trre5g05169 1676 ProSiteProfiles MATH/TRAF domain profile. 65 195 IPR002083 GO:0005515
Trre5g05169 1676 Coils Coil 1446 1512 - -
Trre5g05169 1676 CDD MATH 237 369 IPR002083 GO:0005515
Trre5g05169 1676 CDD MATH 405 540 IPR002083 GO:0005515
Trre5g05169 1676 ProSiteProfiles MATH/TRAF domain profile. 572 696 IPR002083 GO:0005515
Trre5g05169 1676 MobiDBLite consensus disorder prediction 865 885 - -
Trre5g05169 1676 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 396 549 IPR008974 GO:0005515
Trre5g05169 1676 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 232 379 IPR008974 GO:0005515
Trre5g05169 1676 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 562 698 IPR008974 GO:0005515
Trre5g05169 1676 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 51 202 IPR008974 GO:0005515
Trre5g05169 1676 Pfam MATH domain 436 542 IPR002083 GO:0005515
Trre5g05169 1676 Pfam MATH domain 585 691 IPR002083 GO:0005515
Trre5g05169 1676 Pfam MATH domain 72 197 IPR002083 GO:0005515
Trre5g05169 1676 MobiDBLite consensus disorder prediction 1 35 - -
Trre5g05169 1676 SUPERFAMILY TRAF domain-like 405 546 - -
Trre5g05169 1676 SUPERFAMILY TRAF domain-like 64 203 - -
Trre5g05169 1676 SMART math_3 67 175 IPR002083 GO:0005515
Trre5g05169 1676 SMART math_3 577 677 IPR002083 GO:0005515
Trre5g05169 1676 SMART math_3 241 354 IPR002083 GO:0005515
Trre5g05169 1676 SMART math_3 409 521 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05169 Trre-Chr5 52902093 52911077 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05169 - - ccaj:109798115 2927.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05169 5 52902093 52911077 Trre5g05169 5 52902093 52911077 ECH